From 6154458ff549cbd2698a1cb5c4145c68be34584c Mon Sep 17 00:00:00 2001
From: Xavier Grand <xavier.grand@ens-lyon.fr>
Date: Fri, 5 Aug 2022 09:39:43 +0200
Subject: [PATCH] Modif Channel idx_genome.
---
src/RNAseq_XGR.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 59ffd07..1a65e22 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -146,9 +146,8 @@ workflow {
else {
idx_genome = "${params.idx}"
Channel
- .of( idx_genome )
+ .fromPath( idx_genome, type: 'dir' )
.set { genome_indexed_input }
- genome_indexed_input.view()
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
filter_bam_mapped(mapping_withindex.out.bam)
--
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