From a5141a5c85e5d7836670cea84d16d4bdca582cc6 Mon Sep 17 00:00:00 2001
From: Xavier Grand <xavier.grand@ens-lyon.fr>
Date: Fri, 5 Aug 2022 09:45:30 +0200
Subject: [PATCH] Modif Channel idx_genome.
---
src/RNAseq_XGR.nf | 2 +-
src/nf_modules/htseq/main.nf | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 1a65e22..dff5575 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -146,7 +146,7 @@ workflow {
else {
idx_genome = "${params.idx}"
Channel
- .fromPath( idx_genome, type: 'dir' )
+ .of( idx_genome )
.set { genome_indexed_input }
mapping_withindex(genome_indexed_input.collect(), fastp.out.fastq)
stats_bam(mapping_withindex.out.bam)
diff --git a/src/nf_modules/htseq/main.nf b/src/nf_modules/htseq/main.nf
index 51e6de1..5405fea 100644
--- a/src/nf_modules/htseq/main.nf
+++ b/src/nf_modules/htseq/main.nf
@@ -31,7 +31,7 @@ process htseq_count {
}
input:
tuple val(file_id), path(bam), path(bai)
- path (gtf)
+ val(gtf)
output:
path "${file_id}.tsv", emit: counts
--
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