Commit 8285f90f authored by Xavier Grand's avatar Xavier Grand
Browse files

RNAseq_XGR test with Tiny dataset

parent 8b080d07
......@@ -89,6 +89,7 @@ log.info "Genome index location: ${params.idx}"
Channel
.fromFilePairs( params.fastq, size: -1 )
.set { fastq_files }
.view()
Channel
.fromPath( params.gtf )
......@@ -123,8 +124,6 @@ include { index_bam } from "./nf_modules/samtools/main.nf"
workflow {
fastq_files.view()
//########################## PREPROCESSING ####################
// fastp
fastp(fastq_files)
......
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