From 8285f90f04dd9e2c30f065627c2d3d17f8dfd075 Mon Sep 17 00:00:00 2001
From: Xavier Grand <157-xgrand@users.noreply.gitbio.ens-lyon.fr>
Date: Thu, 28 Jul 2022 10:08:43 +0200
Subject: [PATCH] RNAseq_XGR test with Tiny dataset
---
src/RNAseq_XGR.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/src/RNAseq_XGR.nf b/src/RNAseq_XGR.nf
index 3da0abc..317f629 100644
--- a/src/RNAseq_XGR.nf
+++ b/src/RNAseq_XGR.nf
@@ -89,6 +89,7 @@ log.info "Genome index location: ${params.idx}"
Channel
.fromFilePairs( params.fastq, size: -1 )
.set { fastq_files }
+ .view()
Channel
.fromPath( params.gtf )
@@ -123,8 +124,6 @@ include { index_bam } from "./nf_modules/samtools/main.nf"
workflow {
- fastq_files.view()
-
//########################## PREPROCESSING ####################
// fastp
fastp(fastq_files)
--
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