- Jan 13, 2021
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: launch create_multiple_figures for every clip file
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_compo_*: creation of a script to analyse the nucleotide composition of communities enrichied or impoverished in peak density from clip data
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: add reg-adj column in the final file
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nfontrod authored
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- Jan 12, 2021
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nfontrod authored
src/find_interaction_cluster/clip_figures/*.py: creation of a module to produce community figures from CLIP files
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: closing figures after their creation
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: fix get_feature_by_community function
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- Jan 07, 2021
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nfontrod authored
src/find_interaction_cluster/community_figures/__main__.py: lazyparser contrain for output parameter removed + add a parameter sd_community
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: Add a parameter sd_community to show or hide communities sd
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nfontrod authored
src/nt_composition/{__main__.py, distance.py, make_nt_correlation}: add a parameter level to study exons but also genes
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- Jan 04, 2021
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: display dots instead of bars in make_barplot function
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/community_figures/fig_functions.py: deletion of unused import and functions + creation of dic_com when the test type is permutation
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nfontrod authored
src/find_interaction_cluster/community_figures/*.py: script that creates a barplot showing the frequency/value of a particular item in every community of genomic features (genes of exons) that are close in the nucleus
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nfontrod authored
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- Dec 17, 2020
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nfontrod authored
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- Dec 16, 2020
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nfontrod authored
src/find_interaction_cluster/nt_and_community.py: modifications to add the control used for each community in every figure
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- Nov 27, 2020
- Nov 26, 2020
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nfontrod authored
src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: comparison of string scores between couples of genes that are in the same community (at dna level)
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- Nov 25, 2020
- Nov 24, 2020
- Nov 23, 2020
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nfontrod authored
src/find_interaction_cluster/nt_and_community.py: change in output folder from sf_community_enrichment to community_enrichment
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