src/find_interaction_cluster/clip_figures/__main__.py: add a parameter permutation

src/find_interaction_cluster/clip_figures/__main__.py

@@ -17,7 +17,7 @@ def clip_analysis(clip_folder: str, weight: int,
                   global_weight: int, same_gene: bool = True,
                   feature: str = "exon",
                   project: str = "GSM1018963_GSM1018964",
-                  test_type: str = "permutation",
+                  test_type: str = "permutation", iteration: int = 10000,
                   logging_level: str = "DEBUG") -> None:
     """
     Create the final figure
@@ -33,14 +33,18 @@ def clip_analysis(clip_folder: str, weight: int,
     :param clip_folder: A folder containing clip file
     :param test_type: The kind of test to perform for frequency analysis. \
     (default 'lm') (choose from 'lm', 'permutation')
+    :param iteration: The number of iteration
     :param logging_level: The level of data to display (default 'DISABLE')
     :return: The final dataframe that can be used to create clip figures
     """
     clip_folder = Path(clip_folder)
+    if test_type == "lm":
+        raise NotImplementedError("test_type for lm is not implemented !")
     if not clip_folder.is_dir():
         raise NotADirectoryError(f"{clip_folder} is not an existing directory")
     clip_folder_analysis(clip_folder, project, weight, global_weight,
-                         same_gene, feature, test_type, logging_level)
+                         same_gene, feature, test_type, iteration,
+                         logging_level)
 
 
 clip_analysis()
\ No newline at end of file