- Jun 11, 2021
- Jun 09, 2021
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nfontrod authored
src/find_interaction_cluster/sf_and_community_recap_table.py: creates a recap table of the results produced by sf_and_other_communitities.py
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nfontrod authored
src/find_interaction_cluster/sf_and_other_communitities.py: script to check if splicing or transcription factors regulates genes/exons concentrated in communities for 7 community files
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nfontrod authored
src/find_interaction_cluster/__main__.py: launch community enrichment for genes regulated by splicing factors and transcription factors
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: fixes and modification to create one file for each regulation and. modification to handle transcription factors
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nfontrod authored
src/figures_utils/exons_interactions.py: modification of get_every_events_4_a_sl to recover both up and down exons
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nfontrod authored
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- Jun 08, 2021
- Jun 03, 2021
- May 12, 2021
- May 10, 2021
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nfontrod authored
src/find_interaction_cluster/graph_figures/sf_community_graph.py: graph creation displaying the community regulated by many splicing factors and how they interact between them
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nfontrod authored
src/find_interaction_cluster/graph_figures/create_community_node_graph.py: create a graph where each dot corresponds to a dot
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nfontrod authored
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: get_sfname: dont get factors corresponding to the union of the splicing factor
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nfontrod authored
src/find_interaction_cluster/sf_and_communities.py: get_sfname: update the function to get all the splicing factor stored in the database
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- May 07, 2021
- May 04, 2021
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nfontrod authored
src/find_interaction_cluster/graph_figures/*.py: add a submodule to represent each community enriched in genes/exons regulated by a splicing factor
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nfontrod authored
src/find_interaction_cluster/clip_figures/__main__.py: changes in clip_analysis to be able to make community figure showing the precentage of gene in each community regulated by a splicing factor
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nfontrod authored
src/find_interaction_cluster/clip_figures/clip_analyser.py : changes in create_figure and in clip_folder_analysis to be able to create figures of exons regulated by a splicing factor
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- Apr 30, 2021
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nfontrod authored
src/find_interaction_cluster/community_finder.py: modification of write_cytoscape graph to produce json graph
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- Apr 29, 2021
- Apr 23, 2021