src/find_interaction_cluster/community_figures/fig_functions.py: add parameter alpha when selecting permutation test

src/find_interaction_cluster/graph_figures/sf_community_graph.py: changes in figures and add stat files

src/find_interaction_cluster/graph_figures/create_community_node_graph.py: change of node size and edges with

src/find_interaction_cluster/graph_figures/sf_community_graph.py: graph creation displaying the community regulated by many splicing factors and how they interact between them

src/find_interaction_cluster/graph_figures/create_community_node_graph.py: create a graph where each dot corresponds to a dot

src/find_interaction_cluster/sf_and_communities.py: get_sfname: dont get factors corresponding to the union of the splicing factor

src/find_interaction_cluster/sf_and_communities.py: get_sfname: update the function to get all the splicing factor stored in the database

src/find_interaction_cluster/graph_figures/graph_functions.py: add the possibility of selecting communities by doing a permutation test

src/find_interaction_cluster/graph_figures/*.py: add a submodule to represent each community enriched in genes/exons regulated by a splicing factor

src/find_interaction_cluster/clip_figures/__main__.py: changes in clip_analysis to be able to make community figure showing the precentage of gene in each community regulated by a splicing factor

src/find_interaction_cluster/clip_figures/clip_analyser.py : changes in create_figure and in clip_folder_analysis to be able to create figures of exons regulated by a splicing factor

src/find_interaction_cluster/community_finder.py: modification of write_cytoscape graph to produce json graph

src/db_utils/frequency_scripts/create_n_fill_exon_frequency_file.py: fix compute_gene_orf_data data function

src/find_interaction_cluster/community_figures/create_table_4_community_figures.py: script to build the input table used in src/find_interaction_cluster/community_figures/__main__.py script

src/find_interaction_cluster/clip_figures/communities_similarities.py: removing print in is_overlapping method of partition class

src/find_interaction_cluster/clip_figures/clip_analyser_fake_community.py: fix test in create_compo_figures

src/find_interaction_cluster/clip_figures/clip_compo_analyser.py: modification to create on the component (nt, dnt, aa) enrichment for each factors analysed

src/download_encode_eclip/merge_eclip.py: add a parameter level in create_merged_files function to filter within genes (without first and last exons) or within exons (extended by 200 nt at each side)

src/download_encode_eclip/create_gene_bed.py: add a parameter level in create_gene_bed to choose ti create a bed containing genes without their first and last exons or a bed file containing exons (extended by 200 nt at both side) without the first and the last exons