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LBMC
ReGArDS
ChIA-PET_network
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04ff702c75ab8c41b748f8dd68f36bf1f1672b69
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chia-pet_network
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authors
fmortreu
fmortreu
hpolvech
hpolvech
Laurent Modolo
lmodolo
Matthaus Sirvent
msirvent
nfontrod
nfontrod
5 authors
Jan 12, 2021
tests: test directory
· 04ff702c
nfontrod
authored
4 years ago
04ff702c
src/db_utils/config.py: add a test_files attribute for Config class
· e470b4f3
nfontrod
authored
4 years ago
e470b4f3
src/find_interaction_cluster/__main__.py: docstrig and lazyparser changes for test_type paramter
· af2c94ab
nfontrod
authored
4 years ago
af2c94ab
src/find_interaction_cluster/nt_and_community.py: fix a test in compute_controls_distances
· b13ecc0c
nfontrod
authored
4 years ago
b13ecc0c
src/nt_composition/distance.py: change in compute_controls_distances function
· a9b2a119
nfontrod
authored
4 years ago
a9b2a119
src/find_interaction_cluster/community_figures/fig_functions.py: fix...
· d2e6dcc5
nfontrod
authored
4 years ago
d2e6dcc5
Jan 07, 2021
src/find_interaction_cluster/community_figures/__main__.py: lazyparser...
· cbb0dd0b
nfontrod
authored
4 years ago
cbb0dd0b
src/find_interaction_cluster/community_figures/fig_functions.py: Add a...
· c85e0796
nfontrod
authored
4 years ago
c85e0796
src/nt_composition/{__main__.py, distance.py, make_nt_correlation}: add a...
· d417a37c
nfontrod
authored
4 years ago
d417a37c
Jan 04, 2021
src/find_interaction_cluster/community_figures/fig_functions.py: display dots...
· 09486394
nfontrod
authored
4 years ago
09486394
src/find_interaction_cluster/community_figures/__main__.py: fix constraint of iteration parameter
· 7fda7fc3
nfontrod
authored
4 years ago
7fda7fc3
src/find_interaction_cluster/nt_and_community.py: usage of community_figure new module
· 0e813882
nfontrod
authored
4 years ago
0e813882
src/find_interaction_cluster/community_figures/fig_functions.py: fix lm_with_ctrl function
· a7cf3b21
nfontrod
authored
4 years ago
a7cf3b21
src/find_interaction_cluster/community_figures/fig_functions.py: fix get_permutation_mean function
· 7a8fc9fb
nfontrod
authored
4 years ago
7a8fc9fb
src/find_interaction_cluster/community_figures/fig_functions.py: deletion of...
· 661d27aa
nfontrod
authored
4 years ago
661d27aa
src/find_interaction_cluster/community_figures/*.py: script that creates a...
· 00ca1723
nfontrod
authored
4 years ago
00ca1723
src/find_interaction_cluster/nt_and_community.py: fix make_barplot_perm function
· 74856aba
nfontrod
authored
4 years ago
74856aba
Dec 17, 2020
src/find_interaction_cluster/nt_and_community.py: fix the nucleotide list of interest
· e953b5c6
nfontrod
authored
4 years ago
e953b5c6
Dec 16, 2020
src/find_interaction_cluster/nt_and_community.py: modifications to add the...
· d037363c
nfontrod
authored
4 years ago
d037363c
Nov 27, 2020
src/find_interaction_cluster/__main__.py: modifications to use the adapt functions
· 50acb5a3
nfontrod
authored
4 years ago
50acb5a3
src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: removing the...
· 9a838f6c
nfontrod
authored
4 years ago
9a838f6c
src/find_interaction_cluster/nt_and_community.py: replace lmm name by lm
· 062b1e37
nfontrod
authored
4 years ago
062b1e37
Nov 26, 2020
src/find_interaction_cluster/colocalisation_n_ppi_analysis.py: comparison of...
· 7b9d52ff
nfontrod
authored
4 years ago
7b9d52ff
Nov 25, 2020
src/find_interaction_cluster/nt_and_community.py: fix...
· 523b6c7e
nfontrod
authored
4 years ago
523b6c7e
src/find_interaction_cluster/nt_and_community.py: fix main function to work on all components
· e3e8f1ef
nfontrod
authored
4 years ago
e3e8f1ef
src/find_interaction_cluster/__main__.py: add paramter component_type
· e533e08c
nfontrod
authored
4 years ago
e533e08c
src/find_interaction_cluster/nt_and_community.py: works now with dnt and aa
· bd24e056
nfontrod
authored
4 years ago
bd24e056
Nov 24, 2020
src/find_interaction_cluster/nt_and_community.py: error bar on barplots
· a520d7c7
nfontrod
authored
4 years ago
a520d7c7
src/find_interaction_cluster/nt_and_community.py: add functions for barplot...
· c1ec2983
nfontrod
authored
4 years ago
c1ec2983
Nov 23, 2020
src/find_interaction_cluster/nt_and_community.py: change in output folder from...
· 4e1e5741
nfontrod
authored
4 years ago
4e1e5741
src/find_interaction_cluster/nt_and_community.py: add permutations tests
· aacaf00f
nfontrod
authored
4 years ago
aacaf00f
src/find_interaction_cluster/nt_and_community.py: modification of multiple_nt_lmm_launcher launcher
· 10a59086
nfontrod
authored
4 years ago
10a59086
Nov 20, 2020
src/find_interaction_cluster/*.py: replace list parameters weights and...
· f05e0585
nfontrod
authored
4 years ago
f05e0585
Nov 19, 2020
src/find_interaction_cluster/create_ppi_files.py: fix...
· a08f96a4
nfontrod
authored
4 years ago
a08f96a4
Nov 17, 2020
src/find_interaction_cluster/create_ppi_files.py: modification to call the new...
· fd031d72
nfontrod
authored
4 years ago
fd031d72
src/find_interaction_cluster/radomization_test_ppi.py: add 3 functions to...
· 93caebe1
nfontrod
authored
4 years ago
93caebe1
src/find_interaction_cluster/__main__.py: script that launches ppi interaction
· dffdc190
nfontrod
authored
4 years ago
dffdc190
src/find_interaction_cluster/create_ppi_files.py: scripts that check if...
· ddabfd83
nfontrod
authored
4 years ago
ddabfd83
src/find_interaction_cluster/radomization_test_ppi.py: function to perform randomization tests
· 870bfbd7
nfontrod
authored
4 years ago
870bfbd7
Nov 16, 2020
creation of a file linking protein and the fasterDB gene id encoding them from...
· 2eac9baa
nfontrod
authored
4 years ago
2eac9baa
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