src/db_utils/__main__.py

src/db_utils/__main__.py

@@ -9,7 +9,7 @@ Description: Populate the gin database
 from .config import Config
 from ..logging_conf import logging_def
 from .db_creation import main_create_db
-# from .creation_of_exon_table import get_ctrl, get_exon_table
+from .creation_of_exon_table import main_fill_exon_n_gene
 # from .create_freq_table import create_freq_table
 # from .populate_database import populate
 import logging
@@ -19,9 +19,11 @@ def launcher(logging_level: str = "INFO"):
     """
     Create and fill the database
     """
-    logging_def(Config.output, __file__, logging_level)
+    logging_def(Config.db_file.parent, __file__, logging_level)
     logging.info('Database creation')
-    main_create_db()
+    main_create_db('DISABLE')
+    logging.info('Filling cin_gene and cin_exon')
+    main_fill_exon_n_gene('DISABLE')
     # logging.info(f"Creation of {Config.ctrl_exon_file} file")
     # get_ctrl(Config.exon_intern)
     # logging.info(f"Creation of {Config.exon_file} file")