From b819f7a79b30fb045133f6a549cecbf30fbf845d Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Tue, 3 Mar 2020 16:53:10 +0100
Subject: [PATCH] src/db_utils/__main__.py
---
src/db_utils/__main__.py | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/src/db_utils/__main__.py b/src/db_utils/__main__.py
index 5cb66854..35c25348 100755
--- a/src/db_utils/__main__.py
+++ b/src/db_utils/__main__.py
@@ -9,7 +9,7 @@ Description: Populate the gin database
from .config import Config
from ..logging_conf import logging_def
from .db_creation import main_create_db
-# from .creation_of_exon_table import get_ctrl, get_exon_table
+from .creation_of_exon_table import main_fill_exon_n_gene
# from .create_freq_table import create_freq_table
# from .populate_database import populate
import logging
@@ -19,9 +19,11 @@ def launcher(logging_level: str = "INFO"):
"""
Create and fill the database
"""
- logging_def(Config.output, __file__, logging_level)
+ logging_def(Config.db_file.parent, __file__, logging_level)
logging.info('Database creation')
- main_create_db()
+ main_create_db('DISABLE')
+ logging.info('Filling cin_gene and cin_exon')
+ main_fill_exon_n_gene('DISABLE')
# logging.info(f"Creation of {Config.ctrl_exon_file} file")
# get_ctrl(Config.exon_intern)
# logging.info(f"Creation of {Config.exon_file} file")
--
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