diff --git a/src/db_utils/__main__.py b/src/db_utils/__main__.py index 5cb6685408599290cfcf443bd69f6a74b4a250da..35c25348690e699ea6b2373cd5cc34e59cde4dfa 100755 --- a/src/db_utils/__main__.py +++ b/src/db_utils/__main__.py @@ -9,7 +9,7 @@ Description: Populate the gin database from .config import Config from ..logging_conf import logging_def from .db_creation import main_create_db -# from .creation_of_exon_table import get_ctrl, get_exon_table +from .creation_of_exon_table import main_fill_exon_n_gene # from .create_freq_table import create_freq_table # from .populate_database import populate import logging @@ -19,9 +19,11 @@ def launcher(logging_level: str = "INFO"): """ Create and fill the database """ - logging_def(Config.output, __file__, logging_level) + logging_def(Config.db_file.parent, __file__, logging_level) logging.info('Database creation') - main_create_db() + main_create_db('DISABLE') + logging.info('Filling cin_gene and cin_exon') + main_fill_exon_n_gene('DISABLE') # logging.info(f"Creation of {Config.ctrl_exon_file} file") # get_ctrl(Config.exon_intern) # logging.info(f"Creation of {Config.exon_file} file")