Commits · d5cacb230b7c8e1be08c13a56c0e1d6fa6813105 · LBMC / nextflow · GitLab

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Oct 06, 2021
- samtools: add gzip for samtools faidx · d5cacb23
  Laurent Modolo authored 3 years ago
  
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  d5cacb23
Oct 05, 2021
- danpos: fix danpos line return · f6605a7d
  Laurent Modolo authored 3 years ago
  
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  f6605a7d
- ucsc: remote - from bigWigToWig · 47445222
  Laurent Modolo authored 3 years ago
  
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  47445222
- danpos: remove trace of DSL1 · 86073f75
  Laurent Modolo authored 3 years ago
  
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  86073f75
- danpos: change publishDir capture pattern · 94bb6475
  Laurent Modolo authored 3 years ago
  
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  94bb6475
- danpos: fix file_id handling · ea629173
  Laurent Modolo authored 3 years ago
  
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  ea629173
- danpos: change channel cardinality · fa6ec732
  Laurent Modolo authored 3 years ago
  
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  fa6ec732
- rasusa: fix file_id variable · 0ff930d9
  Laurent Modolo authored 3 years ago
  
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  0ff930d9
- danpos: fix channel name · a2cdd53d
  Laurent Modolo authored 3 years ago
  
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  a2cdd53d
Oct 04, 2021
- emase-zero: remove personalized gene_to_transcript file · 1fd19b76
  Laurent Modolo authored 3 years ago
  
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  1fd19b76
- danpos: change bg to bw · d144d7db
  Laurent Modolo authored 3 years ago
  
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  d144d7db
- danpos: simplify bg2wig import · 9d6cde36
  Laurent Modolo authored 3 years ago
  
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  9d6cde36
- emase-zero: fix stderr redirection · 8c4b0d09
  Laurent Modolo authored 3 years ago
  
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  8c4b0d09
Oct 01, 2021
- emase-zero: fix output redirection · d8c768ae
  Laurent Modolo authored 3 years ago
  
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  d8c768ae
- emase-zero: redirect all output to report file · 0212e0cb
  Laurent Modolo authored 3 years ago
  
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  0212e0cb
- emase-zero: update error handling · 3cc41591
  Laurent Modolo authored 3 years ago
  
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  3cc41591
- emase-zero: fix gene_to_transcript file to add strain info to gene name · 3ed5a9ca
  Laurent Modolo authored 3 years ago
  
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  3ed5a9ca
Sep 30, 2021
- emase-zero.nf: change cardinality of the inputs · 231d2aaf
  Laurent Modolo authored 3 years ago
  
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  231d2aaf
Sep 29, 2021
- danpos: add bg input · 86af07f9
  Laurent Modolo authored 3 years ago
  
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  86af07f9
- uscc: add bigwig_to_wig process · d1a7babc
  Laurent Modolo authored 3 years ago
  
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  d1a7babc
- nf_modules: add danpos · ffc9eb1e
  Laurent Modolo authored 3 years ago
  
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  ffc9eb1e
- emase: add diploid_genome process · 4c5e844d
  Laurent Modolo authored 3 years ago
  
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  4c5e844d
- rasusa: add default to no subsampling · 55235371
  Laurent Modolo authored 3 years ago
  
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  55235371
- rasusa: fix multiple bug · d7fb6ef9
  Laurent Modolo authored 3 years ago
  
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  d7fb6ef9
- nf_modules: add rasusa · 7d386a5e
  Laurent Modolo authored 3 years ago
  
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  7d386a5e
Sep 24, 2021
- emase: fix output variable · 72fb6204
  Laurent Modolo authored 3 years ago
  
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  72fb6204
- emase: update input format · bbb9ee8d
  Laurent Modolo authored 3 years ago
  
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  bbb9ee8d
- emase: add diploid_genome process · 0d79273c
  Laurent Modolo authored 3 years ago
  
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  0d79273c
Sep 01, 2021
- bowtie2: simplify index name · 55144a92
  Laurent Modolo authored 3 years ago
  
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  55144a92
Aug 24, 2021
- emase-zero.nf: fix typo :53 and :55 · 9bc7e4c1
  Laurent Modolo authored 3 years ago
  
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  9bc7e4c1
Aug 23, 2021
- emase-zero: replace file_prefix by file_id · a8c8f525
  Laurent Modolo authored 3 years ago
  
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  a8c8f525
Aug 20, 2021
- emase-zero.nf: fix output path · 761843cc
  Laurent Modolo authored 3 years ago
  
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  761843cc
- emase-zero: redirect stdrr to report file · 76661338
  Laurent Modolo authored 3 years ago
  
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  76661338
- emase-zero.nf: fix typo :47 · bfa37a10
  Laurent Modolo authored 3 years ago
  
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  bfa37a10
Aug 19, 2021
- emase-zero: filter g2tr list from sequence name in the fasta · 531b30b6
  Laurent Modolo authored 3 years ago
  
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  531b30b6
- emase-zero: fix typo :21 · fdacd794
  Laurent Modolo authored 3 years ago
  
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  fdacd794
- emase-zero: use g2tr instean of tr2g · 950ec4b3
  Laurent Modolo authored 3 years ago
  
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  950ec4b3
- kb: add g2t process · 734051f9
  Laurent Modolo authored 3 years ago
  
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  734051f9
Aug 18, 2021
- emase-zero: change ${bin} argument · 451b7da0
  Laurent Modolo authored 3 years ago
  
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  451b7da0
Aug 17, 2021
- gatk4: add samtools bam index · 607bf264
  Laurent Modolo authored 3 years ago
  
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  607bf264