Commits · d51c969a17f129892b30410e7af020b9bbf68148 · LBMC / nextflow · GitLab

Snippets Groups Projects

Mar 29, 2019
- update psmn module and hisat2 config · d51c969a
  Laurent Modolo authored 5 years ago
  
  Verified
  
  d51c969a
- hisat2: merge samtools and hisat2 in the process · 59b0f72d
  Laurent Modolo authored 5 years ago
  
  Verified
  
  59b0f72d
- hisat2: update process and config to match new format · 58d2e60a
  Laurent Modolo authored 5 years ago
  
  Verified
  
  58d2e60a
Mar 28, 2019
- htseq: add v0.11.2 · ad48514d
  Laurent Modolo authored 6 years ago
  
  Verified
  
  ad48514d
Mar 27, 2019
- src/nf_modules/Hisat2/ -> src/nf_modules/hisat2/ · 215c8f71
  nfontrod authored 6 years ago
  
  215c8f71
Mar 26, 2019
- multiqc: add v1.7 · 420b7b9e
  Laurent Modolo authored 6 years ago
  
  Verified
  
  420b7b9e
- fastp: add nf modules files · 0d0e5587
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  0d0e5587
Mar 22, 2019
- psmn: remove mail report from config files · 016b5b22
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  016b5b22
Mar 21, 2019
- add tests for macs2 · 5d14ce0b
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  5d14ce0b
Mar 20, 2019
- macs2: add nf module file · 72ffaf95
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  72ffaf95
- fix training_dataset pipeline · 7fa6b2d4
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  7fa6b2d4
Mar 13, 2019
- samblaster: fix test.sh · 666c81d1
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  666c81d1
Mar 07, 2019
- music: fix containers and tests · cc9f3d11
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  cc9f3d11
- rsem: fix tests · 099b8b5e
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  099b8b5e
Mar 06, 2019
- music: fix tests · 7b7eab24
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  7b7eab24
- bwa: fix warining in tests · d0a65940
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  d0a65940
- nf_modules: add singularity in config files and tests.sh · f720ba52
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  f720ba52
- deeptools: add singularity to files · dde8e8a2
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  dde8e8a2
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  60040ed6
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  80b5c871
Mar 04, 2019
- fastqc: add singularity to nf files · c55f3be5
  Laurent Modolo authored 6 years ago
  
  Verified
  
  c55f3be5
- update link for all modules names to lowercase · 9b037d38
  Laurent Modolo authored 6 years ago
  
  Verified
  
  9b037d38
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
  v0.2.8 Verified
  
  231fd9e6
Mar 01, 2019
- Bowtie2: add singularity to nf files · cbd23ab6
  Laurent Modolo authored 6 years ago
  
  Verified
  
  cbd23ab6
- Bowtie: add singularity to nf files · 11a52fbc
  Laurent Modolo authored 6 years ago
  
  Verified
  
  11a52fbc
- BWA: add singularity to nf files · a494361b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  a494361b
- bedtools: update singularity path · edd04712
  Laurent Modolo authored 6 years ago
  
  Verified
  
  edd04712
- UrQt: update singularity path · 1bba0da1
  Laurent Modolo authored 6 years ago
  
  Verified
  
  1bba0da1
- sambamba: fix singularity path · 3dc1c869
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3dc1c869
- BEDtools: add singularity to nf files · f1a4275c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  f1a4275c
- UrQt: add singularity tests · 9fb75825
  Laurent Modolo authored 6 years ago
  
  Verified
  
  9fb75825
- UrQt: switch cpus config from .nf to .config · c8902c46
  Laurent Modolo authored 6 years ago
  
  Verified
  
  c8902c46
- UrQt: add singularity config and test · 2901dd9f
  Laurent Modolo authored 6 years ago
  
  Verified
  
  2901dd9f
Feb 20, 2019
- cudatapt: add cutadapt v1.15 for docker and nf · 93f2be99
  Laurent Modolo authored 6 years ago
  
  93f2be99
Dec 20, 2018
- SAMtools: Dockerfile ubuntu -> alpine · 86ff02d6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  86ff02d6
- deepTools: fix typo in bam_to_bigwig.nf · 7f9cd94b
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  7f9cd94b
- deepTools: add test for 2 bam files · d14e7205
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  d14e7205
Dec 19, 2018
- deepTools: add plot_profile module · 3fede7c6
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  3fede7c6
- deepTools: add compute_matrix module · b25a6418
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  b25a6418
- deepTools: tests.sh for compute_matrix · 0a98c166
  Laurent Modolo authored 6 years ago
  
  Unverified
  
  0a98c166