Commits · b00d2558d4042c6274b58253d00f15461b459f6f · LBMC / nextflow

Oct 08, 2021
- docker: add agat 0.8.0 · b00d2558
  Laurent Modolo authored 3 years ago
  
  b00d2558
- Docker: ucsc add gff to bed script · e1117c52
  Laurent Modolo authored 3 years ago
  
  e1117c52
- ucsc: fix fasta missing variable · a04bb103
  Laurent Modolo authored 3 years ago
  
  a04bb103
- fix include path in danpos and ucsc · 189c84a3
  Laurent Modolo authored 3 years ago
  
  189c84a3
- ucsc: fix include path :6 · bdf483a0
  Laurent Modolo authored 3 years ago
  
  bdf483a0
- ucsc: add chromsize for wigToBigWig · 908ee6cd
  Laurent Modolo authored 3 years ago
  
  908ee6cd
- ucsc: fix varible name :97 · 7db5eb02
  Laurent Modolo authored 3 years ago
  
  7db5eb02
- danspo: fix position -> positions · 9a690027
  Laurent Modolo authored 3 years ago
  
  9a690027
- danpos: fix awk cmd :276 · b009cf2a
  Laurent Modolo authored 3 years ago
  
  b009cf2a
- danpos: change dpeak output cardinality · 318780aa
  Laurent Modolo authored 3 years ago
  
  318780aa
- ucsc: add wigtobigwig convertion · 47eba2c4
  Laurent Modolo authored 3 years ago
  
  47eba2c4
- danpos: add xls > bed convertion · d17e7d00
  Laurent Modolo authored 3 years ago
  
  d17e7d00
- danpos: rm typo :175 · 3df18d9c
  Laurent Modolo authored 3 years ago
  
  3df18d9c
- danpos: rm pattern selection for publishDir · b7ed141a
  Laurent Modolo authored 3 years ago
  
  b7ed141a
- ucsc: change default step size for wig to 10 · 55687f39
  Laurent Modolo authored 3 years ago
  
  55687f39
- danpos: switch back to ucsc for bg to wig convertion · 617ea76a
  Laurent Modolo authored 3 years ago
  
  617ea76a
- ucsc: add bedgraph_to_wig.pl script · f5ded041
  Laurent Modolo authored 3 years ago
  
  f5ded041
- bioconvert: add working version 0.4.0 · ed749710
  Laurent Modolo authored 3 years ago
  
  ed749710
Oct 07, 2021
- docker: bioconvert switch to conda install · f512f1e5
  Laurent Modolo authored 3 years ago
  
  f512f1e5
- danpos: switch from ucsc to bioconvert · c2f594c0
  Laurent Modolo authored 3 years ago
  
  c2f594c0
- ucsc: rm non working BigWigToWig convertion (see bioconvert) · 59c1681f
  Laurent Modolo authored 3 years ago
  
  59c1681f
- bioconvert: add main.nf · 759a77c9
  Laurent Modolo authored 3 years ago
  
  759a77c9
- Docker: add bioconvert · 0385d505
  Laurent Modolo authored 3 years ago
  
  0385d505
- uscs: new test on bigwigtowig convertion · bce662b7
  Laurent Modolo authored 3 years ago
  
  bce662b7
- ucsc: add span info · 5f001abb
  Laurent Modolo authored 3 years ago
  
  5f001abb
- ucsc: update bigwig2_to_wig2 to match changes in bigwig_to_wig · cc9b3a50
  Laurent Modolo authored 3 years ago
  
  cc9b3a50
- ucsc: fix var name in bigwig_to_wig · 9f7c81b7
  Laurent Modolo authored 3 years ago
  
  9f7c81b7
- ucsc: add scape :55 · 1faa76ad
  Laurent Modolo authored 3 years ago
  
  1faa76ad
- ucsc: improve bigwig_to_wig · 3b38b233
  Laurent Modolo authored 3 years ago
  
  3b38b233
- samtools: fix process name :79 · 8f94a832
  Laurent Modolo authored 3 years ago
  
  8f94a832
- samtools: add rm_from_bam process · e4d6d7ab
  Laurent Modolo authored 3 years ago
  
  e4d6d7ab
Oct 06, 2021
- samtools: fix bug :21 · 7286daef
  Laurent Modolo authored 3 years ago
  
  7286daef
- samtools: add gzip for samtools faidx · d5cacb23
  Laurent Modolo authored 3 years ago
  
  d5cacb23
Oct 05, 2021
- danpos: fix danpos line return · f6605a7d
  Laurent Modolo authored 3 years ago
  
  f6605a7d
- ucsc: remote - from bigWigToWig · 47445222
  Laurent Modolo authored 3 years ago
  
  47445222
- danpos: remove trace of DSL1 · 86073f75
  Laurent Modolo authored 3 years ago
  
  86073f75
- danpos: change publishDir capture pattern · 94bb6475
  Laurent Modolo authored 3 years ago
  
  94bb6475
- danpos: fix file_id handling · ea629173
  Laurent Modolo authored 3 years ago
  
  ea629173
- danpos: change channel cardinality · fa6ec732
  Laurent Modolo authored 3 years ago
  
  fa6ec732
- rasusa: fix file_id variable · 0ff930d9
  Laurent Modolo authored 3 years ago
  
  0ff930d9