Commits · 7ed402cc70cb45812006bd7d8476bdf8a7db1469 · LBMC / nextflow

Aug 02, 2018
- RSEM: nf add file_id var in single-end like for paired-end · 7ed402cc
  Laurent Modolo authored 6 years ago
  
  7ed402cc
- FastQC: add id_file var for single-end like for paired-end · 9496c2db
  Laurent Modolo authored 6 years ago
  
  9496c2db
- Bowtie2: modify single-end to have a file_id variable like for · 81a2d4bb
  Laurent Modolo authored 6 years ago
  81a2d4bb
- RSEM: change toList to collect · 52e09505
  Laurent Modolo authored 6 years ago
  
  52e09505
Jul 31, 2018
- Kallisto: change toList to collect · c7a2d66d
  Laurent Modolo authored 6 years ago
  
  c7a2d66d
- Bowtie2: change toList to collect · 9af182a1
  Laurent Modolo authored 6 years ago
  
  9af182a1
- Bowtie: change toList to collect · 3680aa85
  Laurent Modolo authored 6 years ago
  
  3680aa85
- Bowtie: update Bowtie.nf to match test · 78bebd72
  Laurent Modolo authored 6 years ago
  
  78bebd72
- Bowtie: fix single mapping and index parsing · cc81bec2
  Laurent Modolo authored 6 years ago
  
  cc81bec2
Jul 30, 2018
- Bowti2: modify index handle to better deal with weird file names · ff9f90af
  Laurent Modolo authored 6 years ago
  
  ff9f90af
- Bowtie2: add perl dependency and fix single-end example · af1d5130
  Laurent Modolo authored 6 years ago
  
  af1d5130
- fix typo in nf files · 3d5118d9
  Laurent Modolo authored 6 years ago
  
  3d5118d9
Jul 27, 2018
- picard: add sge modules · 4f6d0692
  Laurent Modolo authored 6 years ago
  
  4f6d0692
- Picard/2.18.11: add Dockerfiles · 2bf54bd2
  Laurent Modolo authored 6 years ago
  
  2bf54bd2
- update sge_modules · ee478e18
  Laurent Modolo authored 6 years ago
  
  ee478e18
- MACS2: add docker files · c6846aa4
  Laurent Modolo authored 6 years ago
  
  c6846aa4
Jul 26, 2018
- MUSIC: add docker files · 92d2d77e
  Laurent Modolo authored 6 years ago
  
  92d2d77e
- Bowtie2: fix bug on nf files · 654fe7ec
  Laurent Modolo authored 6 years ago
  
  654fe7ec
- Bowtie: add nf files · 5c25d638
  Laurent Modolo authored 6 years ago
  
  5c25d638
- Bowtie:1.2.2: add docker files · eb371480
  Laurent Modolo authored 6 years ago
  
  eb371480
- bowtie2.nf: improve root finding of index file name as asked by @elabaron · d0d8b68b
  Laurent Modolo authored 6 years ago
  
  d0d8b68b
Jul 25, 2018
- Cleanup SRAtoolkit files · b74bc642
  Laurent Modolo authored 6 years ago
  
  b74bc642
- MultiQC: add nf, test, and fix Dockerfile · a366ef20
  Laurent Modolo authored 6 years ago
  
  a366ef20
- Fastqc.nf: add tests · 47f170cd
  Laurent Modolo authored 6 years ago
  
  47f170cd
- FastQC.nf: add paired process · 6ccc5fa2
  Laurent Modolo authored 6 years ago
  
  6ccc5fa2
- FastQC/Dockerfile: add perl version · e8f0f815
  Laurent Modolo authored 6 years ago
  
  e8f0f815
- FastQC/fastqc.config: update sge config · 49faa7f0
  Laurent Modolo authored 6 years ago
  
  49faa7f0
- rm Ribowave module for when it's ready · 03b4c8d0
  Laurent Modolo authored 6 years ago
  
  03b4c8d0
- rm existing pipeline · 6a3bd949
  Laurent Modolo authored 6 years ago
  
  6a3bd949
Jul 24, 2018
- fastqc.nf : don't save each report in a new folder · a3e3cbb0
  elabaron authored 6 years ago
  
  a3e3cbb0
- fastqc.nf : save only reports and not fastqc.gz file · 06a4d0d4
  elabaron authored 6 years ago
  
  06a4d0d4
- Add Ribowave and Fastq nf modules · f19a3ec0
  elabaron authored 6 years ago
  f19a3ec0
Jul 23, 2018
- Bowtie2/test.sh: fix nf path · 5c6080a9
  Laurent Modolo authored 6 years ago
  
  5c6080a9
Jul 13, 2018
- add pipeline Ribowave for HIV in PSMN · 424c95ff
  elabaron authored 6 years ago
  
  424c95ff
Jul 12, 2018
- add process in ribowave · b005ff34
  elabaron authored 6 years ago
  
  b005ff34
- add ribowave module · 3884efc1
  elabaron authored 6 years ago
  
  3884efc1
Jul 03, 2018
- HISAT2:2.0.0: add docker files · 686a58f8
  Laurent Modolo authored 6 years ago
  
  686a58f8
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 20, 2018
- src/docker_modules/HISAT2/ : module Hisat2 added · 4a6cde0b
  your name authored 6 years ago
  
  4a6cde0b
- src/docker_modules/UrQt/d62c1f8/Dockerfile : correction of the file · 30e42975
  your name authored 6 years ago
  
  30e42975