Picard/2.18.11: add Dockerfiles

src/docker_modules/picard/2.18.11/Dockerfile

+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV PICARD_VERSION=2.18.11
+ENV PACKAGES default-jre=2:1.1* \
+    curl=7.58.0* \
+    ca-certificates=20180409
+
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends ${PACKAGES} && \
+    apt-get clean
+
+RUN curl -k -L https://github.com/broadinstitute/picard/releases/download/${PICARD_VERSION}/picard.jar -o picard.jar && \
+  mkdir -p /usr/share/java/  && \
+  mv picard.jar /usr/share/java/
+
+COPY PicardCommandLine /usr/bin/
+RUN chmod +x /usr/bin/PicardCommandLine

src/docker_modules/picard/2.18.11/PicardCommandLine

+#!/bin/sh
+set -eu
+PRG="$(basename -- "$0")"
+case "$PRG" in
+picard-tools)
+        echo 1>&2 'Warning: picard-tools is deprecated and should be replaced by PicardCommandLine'
+        ;;
+PicardCommandLine)
+        ;;
+*)
+        set -- "$PRG" "$@"
+        ;;
+esac
+
+exec java ${JAVA_OPTIONS-} -jar /usr/share/java/picard.jar "$@"

src/docker_modules/picard/2.18.11/docker_init.sh

+#!/bin/sh
+docker build src/docker_modules/picard/2.18.11 -t 'picard:2.18.11'