Commits · 6cccaa962ece13b51a77566ca1cb0a3140909269 · LBMC / nextflow · GitLab

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May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
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  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
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- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
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  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
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- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
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  803af8b7
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
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  21a8f8b8
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
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  565ffad2
May 10, 2019
- update sambamba to 0.6.9 · 3cd89d35
  Laurent Modolo authored 5 years ago
  
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  3cd89d35
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
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  99eb8705
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 5 years ago
  
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- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 5 years ago
  
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  2547f52d
May 02, 2019
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
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  bf418ede
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 5 years ago
  
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  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 5 years ago
  
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- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 5 years ago
  
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- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 5 years ago
  
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  e069611c
- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored 5 years ago
  
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  950bd41f
- sratoolkit: add in2p3 config · e336cd2a
  Laurent Modolo authored 5 years ago
  
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- samtools: add in2p3 config · 9d8b2010
  Laurent Modolo authored 5 years ago
  
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  9d8b2010
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored 5 years ago
  
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  7505299c
- sambamba: add in2p3 config · a0f7c6dc
  Laurent Modolo authored 5 years ago
  
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- rsem: add in2p3 config · cae8221a
  Laurent Modolo authored 5 years ago
  
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- music: add in2p3 config · 520f4e9f
  Laurent Modolo authored 5 years ago
  
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- multiqc: add in2p3 config · f60953e1
  Laurent Modolo authored 5 years ago
  
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- macs2: add in2p3 config # Please enter the commit message for your changes. Lines starting · abd775c2
  Laurent Modolo authored 5 years ago
  
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- htseq: add in2p3 config · 7e5b25f3
  Laurent Modolo authored 5 years ago
  
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- hisat2: add in2p3 config · eeac2fbf
  Laurent Modolo authored 5 years ago
  
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- fastqc: add in2p3 config · fecdfd5a
  Laurent Modolo authored 5 years ago
  
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- fastp: add in2p3 config · f3d19ff9
  Laurent Modolo authored 5 years ago
  
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- deeptools: add in2p3 config · 1e4f4848
  Laurent Modolo authored 5 years ago
  
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- cutadapt: add in2p3 config · e573e51f
  Laurent Modolo authored 5 years ago
  
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- bwa: add in2p3 config · 9aa69834
  Laurent Modolo authored 5 years ago
  
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  9aa69834
- bowtie2: add in2p3 config · 5b50ecea
  Laurent Modolo authored 5 years ago
  
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  5b50ecea