Commits · 47eba2c496b8c0406fbfd1da798531e8e8a3388f · LBMC / nextflow · GitLab

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Oct 08, 2021
- ucsc: add wigtobigwig convertion · 47eba2c4
  Laurent Modolo authored 3 years ago
  
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  47eba2c4
- danpos: add xls > bed convertion · d17e7d00
  Laurent Modolo authored 3 years ago
  
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  d17e7d00
- danpos: rm typo :175 · 3df18d9c
  Laurent Modolo authored 3 years ago
  
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  3df18d9c
- danpos: rm pattern selection for publishDir · b7ed141a
  Laurent Modolo authored 3 years ago
  
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  b7ed141a
- ucsc: change default step size for wig to 10 · 55687f39
  Laurent Modolo authored 3 years ago
  
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  55687f39
- danpos: switch back to ucsc for bg to wig convertion · 617ea76a
  Laurent Modolo authored 3 years ago
  
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  617ea76a
- ucsc: add bedgraph_to_wig.pl script · f5ded041
  Laurent Modolo authored 3 years ago
  
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  f5ded041
- bioconvert: add working version 0.4.0 · ed749710
  Laurent Modolo authored 3 years ago
  
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  ed749710
Oct 07, 2021
- docker: bioconvert switch to conda install · f512f1e5
  Laurent Modolo authored 3 years ago
  
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  f512f1e5
- danpos: switch from ucsc to bioconvert · c2f594c0
  Laurent Modolo authored 3 years ago
  
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  c2f594c0
- ucsc: rm non working BigWigToWig convertion (see bioconvert) · 59c1681f
  Laurent Modolo authored 3 years ago
  
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  59c1681f
- bioconvert: add main.nf · 759a77c9
  Laurent Modolo authored 3 years ago
  
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  759a77c9
- Docker: add bioconvert · 0385d505
  Laurent Modolo authored 3 years ago
  
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  0385d505
- uscs: new test on bigwigtowig convertion · bce662b7
  Laurent Modolo authored 3 years ago
  
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  bce662b7
- ucsc: add span info · 5f001abb
  Laurent Modolo authored 3 years ago
  
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  5f001abb
- ucsc: update bigwig2_to_wig2 to match changes in bigwig_to_wig · cc9b3a50
  Laurent Modolo authored 3 years ago
  
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  cc9b3a50
- ucsc: fix var name in bigwig_to_wig · 9f7c81b7
  Laurent Modolo authored 3 years ago
  
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  9f7c81b7
- ucsc: add scape :55 · 1faa76ad
  Laurent Modolo authored 3 years ago
  
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  1faa76ad
- ucsc: improve bigwig_to_wig · 3b38b233
  Laurent Modolo authored 3 years ago
  
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  3b38b233
- samtools: fix process name :79 · 8f94a832
  Laurent Modolo authored 3 years ago
  
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  8f94a832
- samtools: add rm_from_bam process · e4d6d7ab
  Laurent Modolo authored 3 years ago
  
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  e4d6d7ab
Oct 06, 2021
- samtools: fix bug :21 · 7286daef
  Laurent Modolo authored 3 years ago
  
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  7286daef
- samtools: add gzip for samtools faidx · d5cacb23
  Laurent Modolo authored 3 years ago
  
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  d5cacb23
Oct 05, 2021
- danpos: fix danpos line return · f6605a7d
  Laurent Modolo authored 3 years ago
  
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  f6605a7d
- ucsc: remote - from bigWigToWig · 47445222
  Laurent Modolo authored 3 years ago
  
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  47445222
- danpos: remove trace of DSL1 · 86073f75
  Laurent Modolo authored 3 years ago
  
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  86073f75
- danpos: change publishDir capture pattern · 94bb6475
  Laurent Modolo authored 3 years ago
  
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  94bb6475
- danpos: fix file_id handling · ea629173
  Laurent Modolo authored 3 years ago
  
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  ea629173
- danpos: change channel cardinality · fa6ec732
  Laurent Modolo authored 3 years ago
  
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  fa6ec732
- rasusa: fix file_id variable · 0ff930d9
  Laurent Modolo authored 3 years ago
  
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  0ff930d9
- danpos: fix channel name · a2cdd53d
  Laurent Modolo authored 3 years ago
  
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  a2cdd53d
Oct 04, 2021
- emase-zero: remove personalized gene_to_transcript file · 1fd19b76
  Laurent Modolo authored 3 years ago
  
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  1fd19b76
- danpos: change bg to bw · d144d7db
  Laurent Modolo authored 3 years ago
  
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  d144d7db
- danpos: simplify bg2wig import · 9d6cde36
  Laurent Modolo authored 3 years ago
  
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  9d6cde36
- emase-zero: fix stderr redirection · 8c4b0d09
  Laurent Modolo authored 3 years ago
  
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  8c4b0d09
Oct 01, 2021
- emase-zero: fix output redirection · d8c768ae
  Laurent Modolo authored 3 years ago
  
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  d8c768ae
- emase-zero: redirect all output to report file · 0212e0cb
  Laurent Modolo authored 3 years ago
  
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  0212e0cb
- emase-zero: update error handling · 3cc41591
  Laurent Modolo authored 3 years ago
  
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  3cc41591
- emase-zero: fix gene_to_transcript file to add strain info to gene name · 3ed5a9ca
  Laurent Modolo authored 3 years ago
  
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  3ed5a9ca
Sep 30, 2021
- emase-zero.nf: change cardinality of the inputs · 231d2aaf
  Laurent Modolo authored 3 years ago
  
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  231d2aaf