Commits · 0d93daf3893edf6db7535b5842c167e0d01b3d62 · LBMC / nextflow · GitLab

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Nov 05, 2019
- singularity: update configs to use docker hub and specified cacheDir · 0d93daf3
  Laurent Modolo authored 5 years ago
  
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  0d93daf3
- docker: change config file to use lbmc/ docker repository · 3ced2125
  Laurent Modolo authored 5 years ago
  
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  3ced2125
Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored 5 years ago
  
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  01dac1f9
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
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  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored 5 years ago
  
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  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored 5 years ago
  
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  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
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  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
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  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
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  0977ef07
May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored 5 years ago
  
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  e491cdc7
- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored 5 years ago
  
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  6a330a3a
May 21, 2019
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
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  f8fe5b84
May 20, 2019
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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  78189351
- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
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  09e2b2fc
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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  f6921da8
- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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  b6101c65
- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
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  854a1709
- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
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  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
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  b7d9581d
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
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  803af8b7
May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
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  21a8f8b8
May 15, 2019
- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
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  565ffad2
May 10, 2019
- update sambamba to 0.6.9 · 3cd89d35
  Laurent Modolo authored 5 years ago
  
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  3cd89d35
May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
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  99eb8705
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 5 years ago
  
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  3da0a73c
- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 5 years ago
  
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  2547f52d
May 02, 2019
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
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  bf418ede
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 5 years ago
  
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  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 5 years ago
  
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  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 5 years ago
  
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  aa5dbf3d
- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 5 years ago
  
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  e069611c
- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored 5 years ago
  
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  950bd41f
- sratoolkit: add in2p3 config · e336cd2a
  Laurent Modolo authored 5 years ago
  
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  e336cd2a
- samtools: add in2p3 config · 9d8b2010
  Laurent Modolo authored 5 years ago
  
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  9d8b2010
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored 5 years ago
  
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  7505299c
- sambamba: add in2p3 config · a0f7c6dc
  Laurent Modolo authored 5 years ago
  
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  a0f7c6dc