Commits · 03bee3cfd784d961c39db8386617f77ffcf8c0ba · LBMC / nextflow · GitLab

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Dec 14, 2018
- cutadapt: dockerfile add bash... · 03bee3cf
  Laurent Modolo authored 6 years ago
  
  03bee3cf
- cutadapt:1.14: Dockerfile ubuntu -> alpine · 76ee441f
  Laurent Modolo authored 6 years ago
  
  76ee441f
Dec 13, 2018
- cutadapt: update docker file · 50f9fbf7
  Laurent Modolo authored 6 years ago
  
  50f9fbf7
Oct 26, 2018
- nf modules config: remove cpus info · 03f44eef
  Laurent Modolo authored 6 years ago
  
  03f44eef
Oct 24, 2018
- add clusterOption for psmn to all config files · e057e9a1
  Laurent Modolo authored 6 years ago
  
  e057e9a1
- training_dataset.config: update psmn config · 9a24a86d
  Laurent Modolo authored 6 years ago
  
  9a24a86d
Oct 23, 2018
- SAMtools: nf update psmn config · 0d23365b
  Laurent Modolo authored 6 years ago
  
  0d23365b
- FastQC: nf update psmn config · 5760392e
  Laurent Modolo authored 6 years ago
  
  5760392e
- samblaster: nf update psmn config · eb58b93f
  Laurent Modolo authored 6 years ago
  
  eb58b93f
- SRAtoolkit: nf update psmn config · 8b66dd73
  Laurent Modolo authored 6 years ago
  
  8b66dd73
- HTSeq: nf update psmn config · 639c47ed
  Laurent Modolo authored 6 years ago
  
  639c47ed
- Bowtie: nf update psmn config · 221bd018
  Laurent Modolo authored 6 years ago
  
  221bd018
- BWA: nf update psmn config · 46c1f9f2
  Laurent Modolo authored 6 years ago
  
  46c1f9f2
- sambamba: nf update psmn config · 14164fee
  Laurent Modolo authored 6 years ago
  
  14164fee
- Bowtie2: nf update config for psmn · 2973fe82
  Laurent Modolo authored 6 years ago
  
  2973fe82
- RSEM: nf update indexing config for psmn · c95c7e0c
  Laurent Modolo authored 6 years ago
  
  c95c7e0c
- nf module: update executor from psmn to sge · 9fdc0424
  Laurent Modolo authored 6 years ago
  
  9fdc0424
- MultiQC: nf update psmn config · 1900998a
  Laurent Modolo authored 6 years ago
  
  1900998a
- RSEM: nf update psmn config · 68aa07a8
  Laurent Modolo authored 6 years ago
  
  68aa07a8
- UrQt: cleanup old config · c34e43a8
  Laurent Modolo authored 6 years ago
  
  c34e43a8
- MUSIC: update psmn config · 86a3e164
  Laurent Modolo authored 6 years ago
  
  86a3e164
- nf config file update nf syntax for process · 3e2c83f3
  Laurent Modolo authored 6 years ago
  
  3e2c83f3
- change occurences of sge into psmn · cdb93acd
  Laurent Modolo authored 6 years ago
  
  cdb93acd
- nf config: rename sge to psmn · fa486dc6
  Laurent Modolo authored 6 years ago
  
  fa486dc6
- Kallisto: update nf config for PSMN · 35e3593b
  Laurent Modolo authored 6 years ago
  
  35e3593b
- BEDtools: update nf config file for PSMN · c1446208
  Laurent Modolo authored 6 years ago
  
  c1446208
- UrQt: update nf config file for the PSMN · e8805ca1
  Laurent Modolo authored 6 years ago
  
  e8805ca1
- cutadapt: update nf config files for the PSMN · 0e1bad5e
  Laurent Modolo authored 6 years ago
  
  0e1bad5e
Oct 16, 2018
- restore bowtie2 from dev · 3ecf28b8
  Laurent Modolo authored 6 years ago
  
  3ecf28b8
- rm SNP_calling scripts · 315a6d3a
  Laurent Modolo authored 6 years ago
  
  315a6d3a
Oct 12, 2018
- 1_JU28_59vs17_SNP_calling.sh: change genome ref for intersect_SNP.R · 4beda1d1
  Laurent Modolo authored 6 years ago
  
  4beda1d1
- intersect_SNP.R: fix getting sequences part · 1ca66529
  Laurent Modolo authored 6 years ago
  
  1ca66529
Oct 11, 2018
- SNP_calling.config: fix module load for SGE · ef2f3fe2
  Laurent Modolo authored 6 years ago
  
  ef2f3fe2
- 1_JU28_59vs17_SNP_calling.sh: add analysis of final_assembly.fasta · 4aec8f08
  Laurent Modolo authored 6 years ago
  
  4aec8f08
- 1_JU28_59vs17_SNP_calling.sh: add PSMN cmd · 741269e6
  Laurent Modolo authored 6 years ago
  
  741269e6
- SNP_calling.config: add bioawk for sge · ea17baf9
  Laurent Modolo authored 6 years ago
  
  ea17baf9
Oct 10, 2018
- SNP_calling.config: rename some module to load · ec7d1b21
  Laurent Modolo authored 6 years ago
  
  ec7d1b21
- SNP_calling.nf: add SGE config · 3d210a36
  Laurent Modolo authored 6 years ago
  
  3d210a36
Oct 09, 2018
- 1_JU28_59vs17_SNP_calling.sh: test of blast · 5d990d32
  Laurent Modolo authored 6 years ago
  
  5d990d32
- SNP_calling.nf: cleanup gatk code · b85258ad
  Laurent Modolo authored 6 years ago
  
  b85258ad