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Unverified Commit c95c7e0c authored by Laurent Modolo's avatar Laurent Modolo
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RSEM: nf update indexing config for psmn

parent 9fdc0424
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......@@ -11,7 +11,14 @@ profiles {
psmn {
process{
withname: index_fasta {
beforeScript = "module purge; module load RSEM/1.3.0; module load SAMtools/1.7"
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "RSEM/1.3.0:SAMtools/1.7"
executor = "sge"
cpus = 16
memory = "30GB"
time = "24h"
queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
penv = 'openmp16'
}
}
}
......
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