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Verified Commit f8760e45 authored by Laurent Modolo's avatar Laurent Modolo
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danpos: add -b to dpos_wig

parent c87853f5
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...@@ -98,10 +98,11 @@ process dpos_wig { ...@@ -98,10 +98,11 @@ process dpos_wig {
input: input:
val fastq val fastq
tuple val(file_id), path(wig_ip) tuple val(file_id), path(wig_ip), path(wig_wce)
output: output:
tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed
tuple val(file_id), path("${file_prefix}/${bam_ip.simpleName}*.wig"), path("${file_prefix}/${bam_wce.simpleName}*.wig"), emit: wig
script: script:
...@@ -124,6 +125,7 @@ process dpos_wig { ...@@ -124,6 +125,7 @@ process dpos_wig {
""" """
danpos.py dpos -m ${m} \ danpos.py dpos -m ${m} \
${params.dpos} \ ${params.dpos} \
-b ${wig_wce} \
-o ${file_prefix} \ -o ${file_prefix} \
${wig_ip} ${wig_ip}
mv ${file_prefix}/pooled/* ${file_prefix}/ mv ${file_prefix}/pooled/* ${file_prefix}/
......
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