diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 02fab7b39ef9ee030d5a35de642a139e2d9c7b63..99ff55dc633b265628002a8200a4dcf1ffe2da52 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -98,10 +98,11 @@ process dpos_wig { input: val fastq - tuple val(file_id), path(wig_ip) + tuple val(file_id), path(wig_ip), path(wig_wce) output: tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed + tuple val(file_id), path("${file_prefix}/${bam_ip.simpleName}*.wig"), path("${file_prefix}/${bam_wce.simpleName}*.wig"), emit: wig script: @@ -124,6 +125,7 @@ process dpos_wig { """ danpos.py dpos -m ${m} \ ${params.dpos} \ + -b ${wig_wce} \ -o ${file_prefix} \ ${wig_ip} mv ${file_prefix}/pooled/* ${file_prefix}/