From f8760e45c56dc26cbabf254e07fb0a4a5f0f7c56 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 26 Oct 2021 14:38:06 +0200
Subject: [PATCH] danpos: add -b to dpos_wig
---
src/nf_modules/danpos/main.nf | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf
index 02fab7b3..99ff55dc 100644
--- a/src/nf_modules/danpos/main.nf
+++ b/src/nf_modules/danpos/main.nf
@@ -98,10 +98,11 @@ process dpos_wig {
input:
val fastq
- tuple val(file_id), path(wig_ip)
+ tuple val(file_id), path(wig_ip), path(wig_wce)
output:
tuple val(file_id), path("${file_prefix}/*.positions.bed"), emit: bed
+ tuple val(file_id), path("${file_prefix}/${bam_ip.simpleName}*.wig"), path("${file_prefix}/${bam_wce.simpleName}*.wig"), emit: wig
script:
@@ -124,6 +125,7 @@ process dpos_wig {
"""
danpos.py dpos -m ${m} \
${params.dpos} \
+ -b ${wig_wce} \
-o ${file_prefix} \
${wig_ip}
mv ${file_prefix}/pooled/* ${file_prefix}/
--
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