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Verified Commit f6605a7d authored by Laurent Modolo's avatar Laurent Modolo
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danpos: fix danpos line return

parent 47445222
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...@@ -43,7 +43,7 @@ process dpos_bam { ...@@ -43,7 +43,7 @@ process dpos_bam {
m = 1 m = 1
} }
""" """
danpos.py dpos -m ${m} danpos.py dpos -m ${m} \
${params.dpos} \ ${params.dpos} \
-b ${bam_wce} \ -b ${bam_wce} \
-o ${file_prefix} \ -o ${file_prefix} \
...@@ -97,7 +97,7 @@ process dpos_wig { ...@@ -97,7 +97,7 @@ process dpos_wig {
m = 1 m = 1
} }
""" """
danpos.py dpos -m ${m} danpos.py dpos -m ${m} \
${params.dpos} \ ${params.dpos} \
-b ${wig_wce} \ -b ${wig_wce} \
-o ${file_prefix} \ -o ${file_prefix} \
...@@ -157,7 +157,7 @@ process dpos_wigvswig { ...@@ -157,7 +157,7 @@ process dpos_wigvswig {
m = 1 m = 1
} }
""" """
danpos.py dpos -m ${m} danpos.py dpos -m ${m} \
${params.dpos} \ ${params.dpos} \
-b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \ -b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \
-o ${file_prefix} \ -o ${file_prefix} \
...@@ -203,7 +203,7 @@ process dpeak_bam { ...@@ -203,7 +203,7 @@ process dpeak_bam {
m = 1 m = 1
} }
""" """
danpos.py dpeak -m ${m} danpos.py dpeak -m ${m} \
${params.dpeak} \ ${params.dpeak} \
-b ${bam_wce} \ -b ${bam_wce} \
-o ${file_prefix} \ -o ${file_prefix} \
...@@ -258,7 +258,7 @@ process dpeak_wig { ...@@ -258,7 +258,7 @@ process dpeak_wig {
m = 1 m = 1
} }
""" """
danpos.py dpeak -m ${m} danpos.py dpeak -m ${m} \
${params.dpeak} \ ${params.dpeak} \
-b ${wig_wce} \ -b ${wig_wce} \
-o ${file_prefix} \ -o ${file_prefix} \
...@@ -319,7 +319,7 @@ process dpeak_wigvswig { ...@@ -319,7 +319,7 @@ process dpeak_wigvswig {
m = 1 m = 1
} }
""" """
danpos.py dpeak -m ${m} danpos.py dpeak -m ${m} \
${params.dpeak} \ ${params.dpeak} \
-b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \ -b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \
-o ${file_prefix} \ -o ${file_prefix} \
......
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