From f6605a7da1062420b45b2fb03d77b0440143c8e5 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 5 Oct 2021 17:33:12 +0200
Subject: [PATCH] danpos: fix danpos line return
---
src/nf_modules/danpos/main.nf | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf
index 15e17580..b17d67b9 100644
--- a/src/nf_modules/danpos/main.nf
+++ b/src/nf_modules/danpos/main.nf
@@ -43,7 +43,7 @@ process dpos_bam {
m = 1
}
"""
-danpos.py dpos -m ${m}
+danpos.py dpos -m ${m} \
${params.dpos} \
-b ${bam_wce} \
-o ${file_prefix} \
@@ -97,7 +97,7 @@ process dpos_wig {
m = 1
}
"""
-danpos.py dpos -m ${m}
+danpos.py dpos -m ${m} \
${params.dpos} \
-b ${wig_wce} \
-o ${file_prefix} \
@@ -157,7 +157,7 @@ process dpos_wigvswig {
m = 1
}
"""
-danpos.py dpos -m ${m}
+danpos.py dpos -m ${m} \
${params.dpos} \
-b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \
-o ${file_prefix} \
@@ -203,7 +203,7 @@ process dpeak_bam {
m = 1
}
"""
-danpos.py dpeak -m ${m}
+danpos.py dpeak -m ${m} \
${params.dpeak} \
-b ${bam_wce} \
-o ${file_prefix} \
@@ -258,7 +258,7 @@ process dpeak_wig {
m = 1
}
"""
-danpos.py dpeak -m ${m}
+danpos.py dpeak -m ${m} \
${params.dpeak} \
-b ${wig_wce} \
-o ${file_prefix} \
@@ -319,7 +319,7 @@ process dpeak_wigvswig {
m = 1
}
"""
-danpos.py dpeak -m ${m}
+danpos.py dpeak -m ${m} \
${params.dpeak} \
-b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \
-o ${file_prefix} \
--
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