diff --git a/src/nf_modules/danpos/main.nf b/src/nf_modules/danpos/main.nf index 15e175807b4f2d3a37498303ecffdea8959506f3..b17d67b9b66488e9d392ae3432a0728a0ae60b86 100644 --- a/src/nf_modules/danpos/main.nf +++ b/src/nf_modules/danpos/main.nf @@ -43,7 +43,7 @@ process dpos_bam { m = 1 } """ -danpos.py dpos -m ${m} +danpos.py dpos -m ${m} \ ${params.dpos} \ -b ${bam_wce} \ -o ${file_prefix} \ @@ -97,7 +97,7 @@ process dpos_wig { m = 1 } """ -danpos.py dpos -m ${m} +danpos.py dpos -m ${m} \ ${params.dpos} \ -b ${wig_wce} \ -o ${file_prefix} \ @@ -157,7 +157,7 @@ process dpos_wigvswig { m = 1 } """ -danpos.py dpos -m ${m} +danpos.py dpos -m ${m} \ ${params.dpos} \ -b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \ -o ${file_prefix} \ @@ -203,7 +203,7 @@ process dpeak_bam { m = 1 } """ -danpos.py dpeak -m ${m} +danpos.py dpeak -m ${m} \ ${params.dpeak} \ -b ${bam_wce} \ -o ${file_prefix} \ @@ -258,7 +258,7 @@ process dpeak_wig { m = 1 } """ -danpos.py dpeak -m ${m} +danpos.py dpeak -m ${m} \ ${params.dpeak} \ -b ${wig_wce} \ -o ${file_prefix} \ @@ -319,7 +319,7 @@ process dpeak_wigvswig { m = 1 } """ -danpos.py dpeak -m ${m} +danpos.py dpeak -m ${m} \ ${params.dpeak} \ -b ${wig_ip_a}:${wig_wce_a},${wig_ip_b}:${wig_wce_b} \ -o ${file_prefix} \