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Unverified Commit 9ec1ade8 authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: bowtie fixe conda path

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src/nf_modules/bowtie/mapping_paired.config
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...@@ -23,7 +23,7 @@ profiles { ...@@ -23,7 +23,7 @@ profiles {
process{ process{
withName: mapping_fastq { withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh" beforeScript = "source $baseDir/.conda_psmn.sh"
conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7" conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 16 cpus = 16
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src/nf_modules/bowtie/mapping_single.config
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View file @ 9ec1ade8
...@@ -23,7 +23,7 @@ profiles { ...@@ -23,7 +23,7 @@ profiles {
process{ process{
withName: mapping_fastq { withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh" beforeScript = "source $baseDir/.conda_psmn.sh"
conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7" conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 16 cpus = 16
......
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