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Unverified Commit 9ec1ade8 authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: bowtie fixe conda path

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src/nf_modules/bowtie/mapping_paired.config
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......@@ -23,7 +23,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh"
conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7"
conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 16
......
src/nf_modules/bowtie/mapping_single.config
+ 1
− 1
View file @ 9ec1ade8
......@@ -23,7 +23,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh"
conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7"
conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 16
......
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