From 9ec1ade86befccdbf2dbc9c223b5201a60646e63 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Wed, 6 Nov 2019 18:06:57 +0100
Subject: [PATCH] nf_modules: bowtie fixe conda path
---
src/nf_modules/bowtie/mapping_paired.config | 2 +-
src/nf_modules/bowtie/mapping_single.config | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/bowtie/mapping_paired.config b/src/nf_modules/bowtie/mapping_paired.config
index 99723a35..545ba4d4 100644
--- a/src/nf_modules/bowtie/mapping_paired.config
+++ b/src/nf_modules/bowtie/mapping_paired.config
@@ -23,7 +23,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh"
- conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7"
+ conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 16
diff --git a/src/nf_modules/bowtie/mapping_single.config b/src/nf_modules/bowtie/mapping_single.config
index 99723a35..545ba4d4 100644
--- a/src/nf_modules/bowtie/mapping_single.config
+++ b/src/nf_modules/bowtie/mapping_single.config
@@ -23,7 +23,7 @@ profiles {
process{
withName: mapping_fastq {
beforeScript = "source $baseDir/.conda_psmn.sh"
- conda = "$baseDir/.conda_envs/bowtie/1.2.2:samtools_1.7"
+ conda = "$baseDir/.conda_envs/bowtie/1.2.2"
executor = "sge"
clusterOptions = "-cwd -V"
cpus = 16
--
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