Commits · a71a5bd84b559d463a97f1e663e916212d905929 · LBMC / Hub / hic

Mar 21, 2024
- add hicstuff report stats · a71a5bd8
  Mia Croiset authored 1 year ago
  
  Verified
  
  a71a5bd8
Feb 22, 2024
- delete build_matrix_cool_alt which is useless now · 104f1db4
  Mia Croiset authored 1 year ago
  
  Verified
  
  104f1db4
Feb 13, 2024
- fix cpu usage from hicstuff functions · adeec642
  Mia Croiset authored 1 year ago
  
  Verified
  
  adeec642
Jan 30, 2024
- add iterative mode for alignment · 47784de8
  Mia Croiset authored 1 year ago
  
  Verified
  
  47784de8
Jan 24, 2024
- hicpro cutsite fail 137 : test with process high · 65699935
  Mia Croiset authored 1 year ago
  
  Verified
  
  65699935
Jan 23, 2024
- change for process high · 610fade9
  Mia Croiset authored 1 year ago
  
  Verified
  
  610fade9
- correct sort for build matrix test full · a49b62ab
  Mia Croiset authored 1 year ago
  
  Verified
  
  a49b62ab
Dec 18, 2023
- add cutsite option · 42307c8b
  Mia Croiset authored 1 year ago
  
  Verified
  
  42307c8b
Dec 05, 2023
- add hicstuff versions · 81a9ff87
  Mia Croiset authored 1 year ago
  
  Verified
  
  81a9ff87
Sep 21, 2023
- add versions to filter pcr picard subworkflow · b7471088
  Mia Croiset authored 1 year ago
  
  Verified
  
  b7471088
Sep 20, 2023
- correct picard pcr filter for hicpro · ce06ca06
  Mia Croiset authored 1 year ago
  
  Verified
  
  ce06ca06
Sep 12, 2023
- picard markduplicates process medium to high · 382d071a
  Mia Croiset authored 1 year ago
  
  Verified
  
  382d071a
Sep 11, 2023
- delete error redirection from cooltools module · 386db97c
  Mia Croiset authored 1 year ago
  
  Verified
  
  386db97c
Sep 06, 2023
- correct versions hicplotmatrix · fd1b0c71
  Mia Croiset authored 1 year ago
  
  Verified
  
  fd1b0c71
Sep 01, 2023
- add new label for matrix plotting · 602db2ae
  Mia Croiset authored 1 year ago
  
  Verified
  
  602db2ae
Aug 29, 2023
- update modules to add versions · cc0944fa
  Mia Croiset authored 1 year ago
  
  Verified
  
  cc0944fa
Jul 13, 2023
- HicPlotMatrix process_high_memory · 3ec3a943
  Mia Croiset authored 1 year ago
  
  Verified
  
  3ec3a943
Jun 14, 2023
- update docker registry + delete samtools index · 7da045e1
  Mia Croiset authored 1 year ago
  
  Verified
  
  7da045e1
Jun 12, 2023
- refactorisation remove gatk module · e92a4085
  Mia Croiset authored 1 year ago
  
  Verified
  
  e92a4085
Jun 08, 2023
- correct path MarkDuplicates · 4f3bd901
  Mia Croiset authored 1 year ago
  
  Verified
  
  4f3bd901
Jun 05, 2023
- modules/nf-core/custom/filterbam/main.nf: add new module · b150868b
  nfontrod authored 1 year ago
  
  Verified
  
  b150868b
Jun 02, 2023
- TO FIX markduplicates picard · b607dc0e
  Mia Croiset authored 1 year ago
  
  Verified
  
  b607dc0e
Jun 01, 2023
- correct path samtools sort · 9107a54e
  Mia Croiset authored 1 year ago
  
  Verified
  
  9107a54e
- TO FIX markduplicates pcr filter option · f8fcb912
  Mia Croiset authored 1 year ago
  
  Verified
  
  f8fcb912
- Apply suggestions from code review · 57b87d86
  Maxime U Garcia authored 1 year ago
  
  Co-authored-by: Adam Talbot <12817534+adamrtalbot@users.noreply.github.com>
  Unverified
  
  57b87d86
May 23, 2023
- Add public_aws_ecr profile for using public ECR images · 36974f0e
  Adam Talbot authored 1 year ago
  
  36974f0e
May 22, 2023
- ubuntu:20.04 to nf-core version · 5f8dff52
  Adam Talbot authored 1 year ago
  
  5f8dff52
- quay.io · 01d51d57
  Adam Talbot authored 1 year ago
  
  01d51d57
- Update local modules · 50ec0d49
  Adam Talbot authored 1 year ago
  
  50ec0d49
- Update all NF-Core modules to latest version which includes no quay.io prefix · 16ed196a
  Adam Talbot authored 1 year ago
  
  16ed196a
May 12, 2023
- hicstuff pcr filter module · 364489ed
  Mia Croiset authored 1 year ago
  
  Verified
  
  364489ed
May 11, 2023
- hicstuff distance law option · fae56c14
  Mia Croiset authored 1 year ago
  
  Verified
  
  fae56c14
May 10, 2023
- hicstuff fragment & filter plot option correction · c3fd3dfa
  Mia Croiset authored 1 year ago
  
  Verified
  
  c3fd3dfa
May 04, 2023
- hicstuff filter events module · a757671e
  Mia Croiset authored 1 year ago
  
  Verified
  
  a757671e
May 03, 2023
- Different matrix building · c4a7c592
  Mia Croiset authored 1 year ago
  
  Verified
  
  c4a7c592
Apr 28, 2023
- Template update for nf-core/tools version 2.8 · 7d1306df
  nf-core-bot authored 1 year ago
  
  7d1306df
Mar 03, 2023
- create build_matrix_cool module + finish args def · e2884900
  Mia Croiset authored 2 years ago
  
  Verified
  
  e2884900
- ARGS hicstuff bam2pairs · b3ded1fb
  Mia Croiset authored 2 years ago
  
  Verified
  
  b3ded1fb
- ARGS hicstuff align_bowtie2 & fragment_enzyme · 53877492
  Mia Croiset authored 2 years ago
  
  Verified
  
  53877492
Mar 01, 2023
- CORRECTION build_matrix output name · 88bb01fc
  Mia Croiset authored 2 years ago
  
  Verified
  
  88bb01fc