Commits · 7f46b8c261a12ae106d44bba81b5a42c8c06e584 · LBMC / Hub / hic

Feb 26, 2024
- update main schema · 7f46b8c2
  Mia Croiset authored 1 year ago
  
  7f46b8c2
- delete hicstuff_min_mapq and use min_qual instead · 2894bcf4
  Mia Croiset authored 1 year ago
  
  2894bcf4
Feb 22, 2024
- remove duplicated arguments between the two workflows · 966011bb
  Mia Croiset authored 1 year ago
  
  966011bb
- delete build_matrix_cool_alt which is useless now · 104f1db4
  Mia Croiset authored 1 year ago
  
  104f1db4
- connect hicstuff sub to cooler subworkflow · c85adfeb
  Mia Croiset authored 1 year ago
  
  c85adfeb
Feb 13, 2024
- fix cpu usage from hicstuff functions · adeec642
  Mia Croiset authored 1 year ago
  
  adeec642
Feb 07, 2024
- update json and usage files · 2d1bd8f7
  Mia Croiset authored 1 year ago
  
  2d1bd8f7
Feb 06, 2024
- add iterative and cutsite options to docs · e55ab8a3
  Mia Croiset authored 1 year ago
  
  e55ab8a3
Feb 02, 2024
- fix use of arima for cutsite · cdd4ed84
  Mia Croiset authored 1 year ago
  
  cdd4ed84
Jan 30, 2024
- add iterative mode for alignment · 47784de8
  Mia Croiset authored 1 year ago
  
  47784de8
- update schema for cutsite · e87e870b
  Mia Croiset authored 1 year ago
  
  e87e870b
Jan 24, 2024
- hicpro cutsite fail 137 : test with process high · 65699935
  Mia Croiset authored 1 year ago
  
  65699935
Jan 23, 2024
- change for process high · 610fade9
  Mia Croiset authored 1 year ago
  
  610fade9
- correct sort for build matrix test full · a49b62ab
  Mia Croiset authored 1 year ago
  
  a49b62ab
Jan 22, 2024
- try correct writing in pre pairs file · eb0ebae5
  Mia Croiset authored 1 year ago
  
  eb0ebae5
- correct write · 4fd7280c
  Mia Croiset authored 1 year ago
  
  4fd7280c
- correct · 2f55bd72
  Mia Croiset authored 1 year ago
  
  2f55bd72
- test change command cutsite · 4462494b
  Mia Croiset authored 1 year ago
  
  4462494b
Jan 19, 2024
- test sort cutsite · 713b5575
  Mia Croiset authored 1 year ago
  
  713b5575
Dec 18, 2023
- add cutsite option · 42307c8b
  Mia Croiset authored 1 year ago
  
  42307c8b
Dec 06, 2023
- correct typo readme · 7e270b75
  Mia Croiset authored 1 year ago
  
  7e270b75
- docs add skip_plot_matrix flag · 082db14b
  Mia Croiset authored 1 year ago
  
  082db14b
Dec 05, 2023
- add hicstuff versions · 81a9ff87
  Mia Croiset authored 1 year ago
  
  81a9ff87
Dec 04, 2023
- correct schema placement · 120ff50f
  Mia Croiset authored 1 year ago
  
  120ff50f
- add pipeline schema · a6828825
  Mia Croiset authored 1 year ago
  
  a6828825
- add pipeline schema · 33e4eea9
  Mia Croiset authored 1 year ago
  
  33e4eea9
- update usage readme with saving options · de26b8fa
  Mia Croiset authored 1 year ago
  
  de26b8fa
- add enabled option to avoid keeping heavy files · 0e5aaa24
  Mia Croiset authored 1 year ago
  
  0e5aaa24
Nov 30, 2023
- refactorisation hicstuff · 66b73182
  Mia Croiset authored 1 year ago
  
  66b73182
Nov 15, 2023
- add arima for hicstuff as DpnII + HinfI · 08e5a646
  Mia Croiset authored 1 year ago
  
  08e5a646
- cleaning param validation new step · 69470730
  Mia Croiset authored 1 year ago
  
  69470730
Nov 07, 2023
- cleaning + add option skip plot matrix · 3331539b
  Mia Croiset authored 1 year ago
  
  3331539b
- simplify int check and function for channel check · 20dc4280
  Mia Croiset authored 1 year ago
  
  20dc4280
Oct 26, 2023
- bypass validation error for bin_size and co · ed5b729c
  Mia Croiset authored 1 year ago
  
  ed5b729c
Oct 12, 2023
- run.sh: add resume tag · c441cecd
  Laurent Modolo authored 1 year ago
  
  c441cecd
Sep 21, 2023
- add versions to filter pcr picard subworkflow · b7471088
  Mia Croiset authored 1 year ago
  
  b7471088
Sep 20, 2023
- correct param name in usage docs · c64b19ad
  Mia Croiset authored 1 year ago
  
  c64b19ad
- correct picard pcr filter for hicpro · ce06ca06
  Mia Croiset authored 1 year ago
  
  ce06ca06
Sep 12, 2023
- picard markduplicates process medium to high · 382d071a
  Mia Croiset authored 1 year ago
  
  382d071a
Sep 11, 2023
- delete error redirection from cooltools module · 386db97c
  Mia Croiset authored 1 year ago
  
  386db97c