Skip to content
Snippets Groups Projects
Verified Commit e87e870b authored by Mia Croiset's avatar Mia Croiset
Browse files

update schema for cutsite

parent 65699935
No related branches found
No related tags found
No related merge requests found
......@@ -714,6 +714,27 @@
"save_fragments": {
"type": "boolean",
"description": "Save fragments files"
},
"save_digested": {
"type": "boolean",
"description": "Save digested fastq files from cutsite process"
},
"cutsite": {
"type": "boolean",
"description": "If true, do cutsite process to pre digest reads"
},
"cutsite_cpu": {
"type": "integer",
"description": "Number of cpu to use for cutsite"
},
"cutsite_seed": {
"type": "integer",
"description": "Minimum size of a fragment (i.e. seed size used in mapping as reads smaller won't be mapped.)"
},
"cutsite_mode": {
"type": "string",
"description": "Mode to use to make the digestion.",
"enum": ["all", "for_vs_rev", "pile"]
}
}
}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment