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Commit ede104bb authored by nservant's avatar nservant
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update conda and test profile

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...@@ -24,6 +24,9 @@ params { ...@@ -24,6 +24,9 @@ params {
// Annotations // Annotations
fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa' fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa'
restriction_site = 'A^AGCTT'
ligation_site = 'AAGCTAGCTT'
min_mapq = 0
// Options // Options
skip_cool = true skip_cool = true
......
...@@ -5,13 +5,15 @@ channels: ...@@ -5,13 +5,15 @@ channels:
- defaults - defaults
dependencies: dependencies:
- python=2.7.13 - python=2.7.13
- pip
- conda-forge::scipy=1.0.1 - conda-forge::scipy=1.0.1
- conda-forge::numpy=1.9.3 - conda-forge::numpy=1.9.3
- conda-forge::r-markdown=0.8 - conda-forge::r-markdown=0.8
- bcbio::bx-python=0.7.3 - bcbio::bx-python=0.7.3
- bioconda::pysam=0.14.1 - bioconda::pysam=0.14.1
- bioconda::iced=0.5.0
- cooler=0.8.3 - cooler=0.8.3
- bowtie2=2.3.5 - bowtie2=2.3.5
- samtools=1.9 - samtools=1.9
- multiqc=1.6 - multiqc=1.6
- pip:
- iced=0.4.2
\ No newline at end of file
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