diff --git a/conf/test.config b/conf/test.config index 511601987f1eb45cc32ca9d5d8eccd71b8c0e41a..b4fd1845c65349aa6a58a82dc033b38d6bf76815 100644 --- a/conf/test.config +++ b/conf/test.config @@ -24,6 +24,9 @@ params { // Annotations fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa' + restriction_site = 'A^AGCTT' + ligation_site = 'AAGCTAGCTT' + min_mapq = 0 // Options skip_cool = true diff --git a/environment.yml b/environment.yml index 63f395d78acdc28689b52be42da13f195d2c98d4..810f4af056251c9616a4619cfc596d3df6e94e8b 100644 --- a/environment.yml +++ b/environment.yml @@ -5,13 +5,15 @@ channels: - defaults dependencies: - python=2.7.13 + - pip - conda-forge::scipy=1.0.1 - conda-forge::numpy=1.9.3 - conda-forge::r-markdown=0.8 - bcbio::bx-python=0.7.3 - bioconda::pysam=0.14.1 - - bioconda::iced=0.5.0 - cooler=0.8.3 - bowtie2=2.3.5 - samtools=1.9 - multiqc=1.6 + - pip: + - iced=0.4.2 \ No newline at end of file