From ede104bb27b22bf7cf7a22d4e502de2782de5148 Mon Sep 17 00:00:00 2001
From: nservant <nservant@curie.fr>
Date: Wed, 17 Apr 2019 13:08:49 +0200
Subject: [PATCH] update conda and test profile
---
conf/test.config | 3 +++
environment.yml | 4 +++-
2 files changed, 6 insertions(+), 1 deletion(-)
diff --git a/conf/test.config b/conf/test.config
index 5116019..b4fd184 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -24,6 +24,9 @@ params {
// Annotations
fasta = 'https://github.com/nf-core/test-datasets/raw/hic/reference/W303_SGD_2015_JRIU00000000.fsa'
+ restriction_site = 'A^AGCTT'
+ ligation_site = 'AAGCTAGCTT'
+ min_mapq = 0
// Options
skip_cool = true
diff --git a/environment.yml b/environment.yml
index 63f395d..810f4af 100644
--- a/environment.yml
+++ b/environment.yml
@@ -5,13 +5,15 @@ channels:
- defaults
dependencies:
- python=2.7.13
+ - pip
- conda-forge::scipy=1.0.1
- conda-forge::numpy=1.9.3
- conda-forge::r-markdown=0.8
- bcbio::bx-python=0.7.3
- bioconda::pysam=0.14.1
- - bioconda::iced=0.5.0
- cooler=0.8.3
- bowtie2=2.3.5
- samtools=1.9
- multiqc=1.6
+ - pip:
+ - iced=0.4.2
\ No newline at end of file
--
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