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Commit ddeabc9f authored by nservant's avatar nservant
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[MODIF] update conda env for testing

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# You can use this file to create a conda environment for this pipeline: # You can use this file to create a conda environment for this pipeline:
# conda env create -f environment.yml # conda env create -f environment.yml
name: nf-core-hic-1.2.0dev name: nf-core-hic-1.2.1dev
channels: channels:
- conda-forge - conda-forge
- bioconda - bioconda
- defaults - defaults
dependencies: dependencies:
- conda-forge::python=3.7.6 - conda-forge::python=3.7.6
- conda-forge::pip=20.0.1
- conda-forge::scipy=1.4.1 - conda-forge::scipy=1.4.1
- conda-forge::numpy=1.18.1 - conda-forge::numpy=1.18.1
- bioconda::iced=0.5.6 - bioconda::iced=0.5.6
...@@ -17,3 +18,10 @@ dependencies: ...@@ -17,3 +18,10 @@ dependencies:
- bioconda::bowtie2=2.3.5 - bioconda::bowtie2=2.3.5
- bioconda::samtools=1.9 - bioconda::samtools=1.9
- bioconda::multiqc=1.8 - bioconda::multiqc=1.8
- bioconda::hicexplorer=3.4.3
- bioconda::bioconductor-hitc=1.32.0
- conda-forge::r-optparse=1.6.6
- pip:
- cooltools
- fanc
\ No newline at end of file
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