diff --git a/environment.yml b/environment.yml index 2680ede654e17edd79b58ce6efb2d3106602cdd6..fa48dca29c285019a41a9fca9e9d89857c0f6b71 100644 --- a/environment.yml +++ b/environment.yml @@ -1,12 +1,13 @@ # You can use this file to create a conda environment for this pipeline: # conda env create -f environment.yml -name: nf-core-hic-1.2.0dev +name: nf-core-hic-1.2.1dev channels: - conda-forge - bioconda - defaults dependencies: - conda-forge::python=3.7.6 + - conda-forge::pip=20.0.1 - conda-forge::scipy=1.4.1 - conda-forge::numpy=1.18.1 - bioconda::iced=0.5.6 @@ -17,3 +18,10 @@ dependencies: - bioconda::bowtie2=2.3.5 - bioconda::samtools=1.9 - bioconda::multiqc=1.8 + + - bioconda::hicexplorer=3.4.3 + - bioconda::bioconductor-hitc=1.32.0 + - conda-forge::r-optparse=1.6.6 + - pip: + - cooltools + - fanc \ No newline at end of file