From ddeabc9f38a35e7193e469bdc29e653028ef8fb8 Mon Sep 17 00:00:00 2001
From: nservant <nservant@curie.fr>
Date: Tue, 19 May 2020 15:16:37 +0200
Subject: [PATCH] [MODIF] update conda env for testing

---
 environment.yml | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/environment.yml b/environment.yml
index 2680ede..fa48dca 100644
--- a/environment.yml
+++ b/environment.yml
@@ -1,12 +1,13 @@
 # You can use this file to create a conda environment for this pipeline:
 #   conda env create -f environment.yml
-name: nf-core-hic-1.2.0dev
+name: nf-core-hic-1.2.1dev
 channels:
   - conda-forge
   - bioconda
   - defaults
 dependencies:
   - conda-forge::python=3.7.6
+  - conda-forge::pip=20.0.1
   - conda-forge::scipy=1.4.1
   - conda-forge::numpy=1.18.1
   - bioconda::iced=0.5.6
@@ -17,3 +18,10 @@ dependencies:
   - bioconda::bowtie2=2.3.5
   - bioconda::samtools=1.9
   - bioconda::multiqc=1.8
+
+  - bioconda::hicexplorer=3.4.3
+  - bioconda::bioconductor-hitc=1.32.0
+  - conda-forge::r-optparse=1.6.6
+  - pip:
+    - cooltools
+    - fanc
\ No newline at end of file
-- 
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