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Verified Commit ad343845 authored by nfontrod's avatar nfontrod
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subworkflows/local/hicstuff_sub.nf: update

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subworkflows/local/hicstuff_sub.nf
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...@@ -96,9 +96,7 @@ workflow HICSTUFF_SUB { ...@@ -96,9 +96,7 @@ workflow HICSTUFF_SUB {
} }
else { else {
// BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam } BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam }
SAMTOOLS_SORT_N(BOWTIE2_ALIGNMENT.out.bam)
SAMTOOLS_SORT_N.out.bam.set{ ch_bam }
ch_bam.combine(ch_bam) ch_bam.combine(ch_bam)
.map { .map {
...@@ -107,7 +105,6 @@ workflow HICSTUFF_SUB { ...@@ -107,7 +105,6 @@ workflow HICSTUFF_SUB {
}.set{ new_ch_bam } }.set{ new_ch_bam }
} }
new_ch_bam.view()
BAM2PAIRS( BAM2PAIRS(
new_ch_bam, new_ch_bam,
......
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