diff --git a/subworkflows/local/hicstuff_sub.nf b/subworkflows/local/hicstuff_sub.nf index a27be249684a8c468b82143fdeecd97dfe19ac45..3f49999601013b356c25b19ad04b6753ed0d8d80 100644 --- a/subworkflows/local/hicstuff_sub.nf +++ b/subworkflows/local/hicstuff_sub.nf @@ -96,9 +96,7 @@ workflow HICSTUFF_SUB { } else { - // BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam } - SAMTOOLS_SORT_N(BOWTIE2_ALIGNMENT.out.bam) - SAMTOOLS_SORT_N.out.bam.set{ ch_bam } + BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam } ch_bam.combine(ch_bam) .map { @@ -107,7 +105,6 @@ workflow HICSTUFF_SUB { }.set{ new_ch_bam } } - new_ch_bam.view() BAM2PAIRS( new_ch_bam,