From ad343845de84c9d1780ea46e8f3c2e79d24478d3 Mon Sep 17 00:00:00 2001
From: Fontrodona Nicolas <nicolas.fontrodona@ens-lyon.fr>
Date: Mon, 5 Jun 2023 14:47:36 +0200
Subject: [PATCH] subworkflows/local/hicstuff_sub.nf: update
---
subworkflows/local/hicstuff_sub.nf | 5 +----
1 file changed, 1 insertion(+), 4 deletions(-)
diff --git a/subworkflows/local/hicstuff_sub.nf b/subworkflows/local/hicstuff_sub.nf
index a27be24..3f49999 100644
--- a/subworkflows/local/hicstuff_sub.nf
+++ b/subworkflows/local/hicstuff_sub.nf
@@ -96,9 +96,7 @@ workflow HICSTUFF_SUB {
}
else {
- // BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam }
- SAMTOOLS_SORT_N(BOWTIE2_ALIGNMENT.out.bam)
- SAMTOOLS_SORT_N.out.bam.set{ ch_bam }
+ BOWTIE2_ALIGNMENT.out.bam.set{ ch_bam }
ch_bam.combine(ch_bam)
.map {
@@ -107,7 +105,6 @@ workflow HICSTUFF_SUB {
}.set{ new_ch_bam }
}
- new_ch_bam.view()
BAM2PAIRS(
new_ch_bam,
--
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