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Verified Commit 88bb01fc authored by Mia Croiset's avatar Mia Croiset
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CORRECTION build_matrix output name

parent dcd2e93f
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process BUILD_MATRIX { process BUILD_MATRIX {
tag '$idx_pairs' tag "$idx_pairs"
label 'process_single' label 'process_single'
conda "conda-forge::python=3.9 conda-forge::biopython=1.80 conda-forge::numpy=1.22.3 conda-forge::matplotlib=3.6.3 conda-forge::pandas=1.5.3" conda "conda-forge::python=3.9 conda-forge::biopython=1.80 conda-forge::numpy=1.22.3 conda-forge::matplotlib=3.6.3 conda-forge::pandas=1.5.3"
container = "lbmc/hicstuff:3.1.3" container = "lbmc/hicstuff:3.1.3"
input: input:
tuple val(meta), path(idx_pairs) tuple val(meta1), path(idx_pairs)
tuple val(meta), path(fragments_list) tuple val(meta), path(fragments_list)
output: output:
tuple val(meta), path("abs_fragments_contacts_weighted.txt"), emit: matrix tuple val(meta), path("${meta1.id}_fragments_contacts_weighted.txt"), emit: matrix
script: script:
""" """
hicstuff_build_matrix.py -p ${idx_pairs} -f ${fragments_list} -t graal -o abs_fragments_contacts_weighted.txt hicstuff_build_matrix.py -p ${idx_pairs} -f ${fragments_list} -t graal -o abs_fragments_contacts_weighted.txt
mv abs_fragments_contacts_weighted.txt ${meta1.id}_fragments_contacts_weighted.txt
""" """
} }
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