From 88bb01fc7c8cdd9faeea13a4113f6cafe6ffbd92 Mon Sep 17 00:00:00 2001
From: Mia Croiset <mia.croiset@ens-lyon.fr>
Date: Wed, 1 Mar 2023 11:06:01 +0100
Subject: [PATCH] CORRECTION build_matrix output name
---
modules/local/hicstuff/build_matrix.nf | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/modules/local/hicstuff/build_matrix.nf b/modules/local/hicstuff/build_matrix.nf
index 0036dcb..c81df96 100644
--- a/modules/local/hicstuff/build_matrix.nf
+++ b/modules/local/hicstuff/build_matrix.nf
@@ -1,19 +1,21 @@
process BUILD_MATRIX {
- tag '$idx_pairs'
+ tag "$idx_pairs"
label 'process_single'
conda "conda-forge::python=3.9 conda-forge::biopython=1.80 conda-forge::numpy=1.22.3 conda-forge::matplotlib=3.6.3 conda-forge::pandas=1.5.3"
container = "lbmc/hicstuff:3.1.3"
input:
- tuple val(meta), path(idx_pairs)
+ tuple val(meta1), path(idx_pairs)
tuple val(meta), path(fragments_list)
output:
- tuple val(meta), path("abs_fragments_contacts_weighted.txt"), emit: matrix
+ tuple val(meta), path("${meta1.id}_fragments_contacts_weighted.txt"), emit: matrix
script:
"""
hicstuff_build_matrix.py -p ${idx_pairs} -f ${fragments_list} -t graal -o abs_fragments_contacts_weighted.txt
+
+ mv abs_fragments_contacts_weighted.txt ${meta1.id}_fragments_contacts_weighted.txt
"""
}
--
GitLab