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Commit 46235e73 authored by nservant's avatar nservant
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last changes from review

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# nf-core/hic: Changelog
## v1.1.0
## v1.1.0 - 2019-10-15
* Support 'N' base motif in restriction/ligation sites
* Support multiple restriction enzymes/ligattion sites (comma separated) ([#31](https://github.com/nf-core/hic/issues/31))
......
......@@ -85,7 +85,7 @@ def helpMessage() {
* SET UP CONFIGURATION VARIABLES
*/
// Show help emssage
// Show help message
if (params.help){
helpMessage()
exit 0
......@@ -281,7 +281,7 @@ if(params.email) {
summary['MultiQC maxsize'] = params.maxMultiqcEmailFileSize
}
log.info summary.collect { k,v -> "${k.padRight(18)}: $v" }.join("\n")
log.info "\033[2m----------------------------------------------------\033[0m"
log.info "-\033[2m--------------------------------------------------\033[0m-"
// Check the hostnames against configured profiles
checkHostname()
......@@ -953,10 +953,10 @@ workflow.onComplete {
c_green = params.monochrome_logs ? '' : "\033[0;32m";
c_red = params.monochrome_logs ? '' : "\033[0;31m";
if (workflow.stats.ignoredCountFmt > 0 && workflow.success) {
if (workflow.stats.ignoredCount > 0 && workflow.success) {
log.info "${c_purple}Warning, pipeline completed, but with errored process(es) ${c_reset}"
log.info "${c_red}Number of ignored errored process(es) : ${workflow.stats.ignoredCountFmt} ${c_reset}"
log.info "${c_green}Number of successfully ran process(es) : ${workflow.stats.succeedCountFmt} ${c_reset}"
log.info "${c_red}Number of ignored errored process(es) : ${workflow.stats.ignoredCount} ${c_reset}"
log.info "${c_green}Number of successfully ran process(es) : ${workflow.stats.succeedCount} ${c_reset}"
}
if(workflow.success){
......
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