From 46235e73111c6d11fece3c5f71030e1851552334 Mon Sep 17 00:00:00 2001
From: nservant <nservant@curie.fr>
Date: Tue, 15 Oct 2019 09:00:04 +0200
Subject: [PATCH] last changes from review
---
CHANGELOG.md | 2 +-
main.nf | 10 +++++-----
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index c62d203..aac5146 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,6 +1,6 @@
# nf-core/hic: Changelog
-## v1.1.0
+## v1.1.0 - 2019-10-15
* Support 'N' base motif in restriction/ligation sites
* Support multiple restriction enzymes/ligattion sites (comma separated) ([#31](https://github.com/nf-core/hic/issues/31))
diff --git a/main.nf b/main.nf
index 67ba0b8..a0f7ac1 100644
--- a/main.nf
+++ b/main.nf
@@ -85,7 +85,7 @@ def helpMessage() {
* SET UP CONFIGURATION VARIABLES
*/
-// Show help emssage
+// Show help message
if (params.help){
helpMessage()
exit 0
@@ -281,7 +281,7 @@ if(params.email) {
summary['MultiQC maxsize'] = params.maxMultiqcEmailFileSize
}
log.info summary.collect { k,v -> "${k.padRight(18)}: $v" }.join("\n")
-log.info "\033[2m----------------------------------------------------\033[0m"
+log.info "-\033[2m--------------------------------------------------\033[0m-"
// Check the hostnames against configured profiles
checkHostname()
@@ -953,10 +953,10 @@ workflow.onComplete {
c_green = params.monochrome_logs ? '' : "\033[0;32m";
c_red = params.monochrome_logs ? '' : "\033[0;31m";
- if (workflow.stats.ignoredCountFmt > 0 && workflow.success) {
+ if (workflow.stats.ignoredCount > 0 && workflow.success) {
log.info "${c_purple}Warning, pipeline completed, but with errored process(es) ${c_reset}"
- log.info "${c_red}Number of ignored errored process(es) : ${workflow.stats.ignoredCountFmt} ${c_reset}"
- log.info "${c_green}Number of successfully ran process(es) : ${workflow.stats.succeedCountFmt} ${c_reset}"
+ log.info "${c_red}Number of ignored errored process(es) : ${workflow.stats.ignoredCount} ${c_reset}"
+ log.info "${c_green}Number of successfully ran process(es) : ${workflow.stats.succeedCount} ${c_reset}"
}
if(workflow.success){
--
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