Verified Commit af707de4 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

update 1_scrnaseq_data

parent 52c51147
Pipeline #336 failed with stage
in 22 seconds
......@@ -776,7 +776,7 @@ Do we keep reads mapping to introns ?
Do we keep reads mapping after the annotated 3' UTR ?
\begin{center}
\includegraphics[width=0.65\textwidth]{img/undetected_read_intergenic_mapping.png}
\includegraphics[width=0.65\textwidth]{./img/undetected_read_intergenic_mapping.png}
\end{center}
## mRNA identification
......@@ -789,7 +789,7 @@ Do we keep reads mapping after the annotated 3' UTR ?
\begin{columns}
\column{0.65\textwidth}
\begin{center}
\includegraphics[width=\textwidth]{img/discared_reads.png
\includegraphics[width=\textwidth]{./img/discared_reads.png
}
\end{center}
\column{0.35\textwidth}
......
......@@ -6,19 +6,19 @@ all: 1_scrnaseq_data/scrnaseq_data.pdf \
6_dea/dea.pdf
1_scrnaseq_data/scrnaseq_data.pdf: 1_scrnaseq_data/scrnaseq_data.Rmd
cd 1_scrnaseq_data/ && make
make -C 1_scrnaseq_data/
2_normalization/normalization.pdf: 2_normalization/normalization.Rmd
cd 2_normalization/ && make
make -C 2_normalization/
3_dimension_reduction/dimension_reduction.pdf: 3_dimension_reduction/dimension_reduction.Rmd
cd 3_dimension_reduction/ && make
make -C 3_dimension_reduction/
4_clustering/clustering.pdf: 4_clustering/clustering.Rmd
cd 4_clustering/ && make
make -C 4_clustering/
5_pseudo_time/pseudo_time.pdf: 5_pseudo_time/pseudo_time.Rmd
cd 5_pseudo_time/ && make
make -C 5_pseudo_time/
6_dea/dea.pdf: 6_dea/dea.Rmd
cd 6_dea/ && make
make -C 6_dea/
\ No newline at end of file
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