From af707de4f5f2f7741014982875c732cd2f67e001 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 7 Jul 2022 13:44:21 +0200
Subject: [PATCH] update 1_scrnaseq_data
---
1_scrnaseq_data/scrnaseq_data.Rmd | 4 ++--
Makefile | 12 ++++++------
2 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/1_scrnaseq_data/scrnaseq_data.Rmd b/1_scrnaseq_data/scrnaseq_data.Rmd
index 866de37..582a2ee 100644
--- a/1_scrnaseq_data/scrnaseq_data.Rmd
+++ b/1_scrnaseq_data/scrnaseq_data.Rmd
@@ -776,7 +776,7 @@ Do we keep reads mapping to introns ?
Do we keep reads mapping after the annotated 3' UTR ?
\begin{center}
-\includegraphics[width=0.65\textwidth]{img/undetected_read_intergenic_mapping.png}
+\includegraphics[width=0.65\textwidth]{./img/undetected_read_intergenic_mapping.png}
\end{center}
## mRNA identification
@@ -789,7 +789,7 @@ Do we keep reads mapping after the annotated 3' UTR ?
\begin{columns}
\column{0.65\textwidth}
\begin{center}
-\includegraphics[width=\textwidth]{img/discared_reads.png
+\includegraphics[width=\textwidth]{./img/discared_reads.png
}
\end{center}
\column{0.35\textwidth}
diff --git a/Makefile b/Makefile
index dee9f92..d162d6c 100644
--- a/Makefile
+++ b/Makefile
@@ -6,19 +6,19 @@ all: 1_scrnaseq_data/scrnaseq_data.pdf \
6_dea/dea.pdf
1_scrnaseq_data/scrnaseq_data.pdf: 1_scrnaseq_data/scrnaseq_data.Rmd
- cd 1_scrnaseq_data/ && make
+ make -C 1_scrnaseq_data/
2_normalization/normalization.pdf: 2_normalization/normalization.Rmd
- cd 2_normalization/ && make
+ make -C 2_normalization/
3_dimension_reduction/dimension_reduction.pdf: 3_dimension_reduction/dimension_reduction.Rmd
- cd 3_dimension_reduction/ && make
+ make -C 3_dimension_reduction/
4_clustering/clustering.pdf: 4_clustering/clustering.Rmd
- cd 4_clustering/ && make
+ make -C 4_clustering/
5_pseudo_time/pseudo_time.pdf: 5_pseudo_time/pseudo_time.Rmd
- cd 5_pseudo_time/ && make
+ make -C 5_pseudo_time/
6_dea/dea.pdf: 6_dea/dea.Rmd
- cd 6_dea/ && make
+ make -C 6_dea/
\ No newline at end of file
--
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