diff --git a/1_scrnaseq_data/scrnaseq_data.Rmd b/1_scrnaseq_data/scrnaseq_data.Rmd index 866de37325157fc1db72bb493582ae499f160579..582a2ee55a02c6558df313b2635244a57c3585f0 100644 --- a/1_scrnaseq_data/scrnaseq_data.Rmd +++ b/1_scrnaseq_data/scrnaseq_data.Rmd @@ -776,7 +776,7 @@ Do we keep reads mapping to introns ? Do we keep reads mapping after the annotated 3' UTR ? \begin{center} -\includegraphics[width=0.65\textwidth]{img/undetected_read_intergenic_mapping.png} +\includegraphics[width=0.65\textwidth]{./img/undetected_read_intergenic_mapping.png} \end{center} ## mRNA identification @@ -789,7 +789,7 @@ Do we keep reads mapping after the annotated 3' UTR ? \begin{columns} \column{0.65\textwidth} \begin{center} -\includegraphics[width=\textwidth]{img/discared_reads.png +\includegraphics[width=\textwidth]{./img/discared_reads.png } \end{center} \column{0.35\textwidth} diff --git a/Makefile b/Makefile index dee9f92e51566234ef4b9ad7a738b62ccb9ca9e0..d162d6c5f6a53682f2934de4cd9fdec435b96f11 100644 --- a/Makefile +++ b/Makefile @@ -6,19 +6,19 @@ all: 1_scrnaseq_data/scrnaseq_data.pdf \ 6_dea/dea.pdf 1_scrnaseq_data/scrnaseq_data.pdf: 1_scrnaseq_data/scrnaseq_data.Rmd - cd 1_scrnaseq_data/ && make + make -C 1_scrnaseq_data/ 2_normalization/normalization.pdf: 2_normalization/normalization.Rmd - cd 2_normalization/ && make + make -C 2_normalization/ 3_dimension_reduction/dimension_reduction.pdf: 3_dimension_reduction/dimension_reduction.Rmd - cd 3_dimension_reduction/ && make + make -C 3_dimension_reduction/ 4_clustering/clustering.pdf: 4_clustering/clustering.Rmd - cd 4_clustering/ && make + make -C 4_clustering/ 5_pseudo_time/pseudo_time.pdf: 5_pseudo_time/pseudo_time.Rmd - cd 5_pseudo_time/ && make + make -C 5_pseudo_time/ 6_dea/dea.pdf: 6_dea/dea.Rmd - cd 6_dea/ && make + make -C 6_dea/ \ No newline at end of file